Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00978 ATGAATTCTGAATCAGAAACGTGTTCTGAAATGGTCGCTAGGAGGAGAATGTGGACAAAGAGGAAGAAAAGAGGTTCTTCGATATCGGATTTAATTTTTTGTTTCTGTGTTTTTTCCACTCTGTTTCGGCCGATTTTGGCTCTGAGACCTCTGCGGGAAAGTACTTGGTCATGGGGTGATGAGTGGCTATTTACCAGAAGAGATGAGAATGACCTGGGCCCATATTCTGCTTGGAACATAACAGGAACCTACAGAGGGACTTGGAGCTTCCTAGATTCCATCAATAGCTCTTCCCGGTTTCCAGATTTCGGGAGATCTAATGGCATTTCTGTCTTTGAATTATTGAGTGTTCCGACCAAGATAACTGGTGTACATTATGTCCAGGGAGTAATTATTTTCCACGATGCATTTGATGGTGATCATGATGTCGGAGCTGCTCAAATGAGGGTAGAAGGTGTATACATATGGCCTTTTAGACAACTTCGAATGGTAGCAAACAGTCGAAAAGATGGAGAATTAGACCAAGAAGATGACTACATTTTATCCAATCCATATCACTTGCTTGGAGTTTTCTCATCTCAGATTTTTCAAGAGTCTCGCCGAGCGAAGATTTGGAGGAGAAAAAATTCACCTACCTATGACATGGAGAAAAACTGTAATTTAGAAATTGCTGCTCAAATTTCACATGTCTCGTCCACTCAAAATGATGGAGATCGGGAGCGTTATCATTTGGAAGGAATAATGGAGAGTCCTGGGGATGATGATAGAGAGTGCTTCTTGCCCATAAGGTTAAATGCTACTTCTGTCAACATTGACGTTTACTACAACAAAGCAGTTAACTACACCTTGATGGTCACCTTTATCTCTTTCCTTCAAGTTCTTCTGTTAATTCGACAAATGGAACATAGCAATACTCAGTCTGGAGCAGCTAAAGTTTCAGTTTTAATGATTGGGCAACAAGCCATCATGGATTCTTATCTTTGTCTTTTACATCTAACTGCAGGGATATTAGTTGAATCCCTCTTTAATGCTTTTGCCACAGCTGCCTTCTTCAAGTTCGTTGTTTTCTCCATTTTTGAGATGAGATATCTTCTTGCAATATGGAAAGCAAGTAGGCCTATGAATAATGCAGAAGGATGGGAGACAATGCGACGTGAGCTATCAGTTCTTTATAGTCGTTTCTATGGGATTCTTTTGGGAGGCATTATAGTCATGTATGAGCTTCACAAATTTCTGCGGCCTATTCTTCTCGTTCTGTACTCCTTTTGGATCCCTCAAATAGTCACTAATGTTGTACGTGATTCAAGAAAACCATTACATCCTCATTACATATTAGGTATGACTGTCACTCGGCTGGCAATCCCGTTATATGTCTTTGGTTGCCCAAACAACTTCATGCGCATAGAGCATGACAAGAATTGGTGTATCTGTTTGGGAGTATTCATGGGACTCCAAGCATCAATTCTTCTTCTTCAACATTATCTTGGATCTCGGTGCTTCATTCCACATCAGATCTTACCAGAGAAATATTGCTACTATAGGAGATTTGACCATGATACGAGTCATGCCACGGACTGTGTCATTTGCATGACTGCCGTCGATCTTGCACAACAATCCAACGACTACATGGTGACACCATGTGAGCATTTCTTCCATTGCGGTTGTTTACAAAGGTGGATGGATATAAAGATGGAATGCCCAACTTGCCGGCGACCCCTGCCACCAGCCTAA 1731 0.4136 MNSESETCSEMVARRRMWTKRKKRGSSISDLIFCFCVFSTLFRPILALRPLRESTWSWGDEWLFTRRDENDLGPYSAWNITGTYRGTWSFLDSINSSSRFPDFGRSNGISVFELLSVPTKITGVHYVQGVIIFHDAFDGDHDVGAAQMRVEGVYIWPFRQLRMVANSRKDGELDQEDDYILSNPYHLLGVFSSQIFQESRRAKIWRRKNSPTYDMEKNCNLEIAAQISHVSSTQNDGDRERYHLEGIMESPGDDDRECFLPIRLNATSVNIDVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSVLMIGQQAIMDSYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPMNNAEGWETMRRELSVLYSRFYGILLGGIIVMYELHKFLRPILLVLYSFWIPQIVTNVVRDSRKPLHPHYILGMTVTRLAIPLYVFGCPNNFMRIEHDKNWCICLGVFMGLQASILLLQHYLGSRCFIPHQILPEKYCYYRRFDHDTSHATDCVICMTAVDLAQQSNDYMVTPCEHFFHCGCLQRWMDIKMECPTCRRPLPPA* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00978 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Eupl06g00978 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Eupl06g00978 576 PANTHER RING ZINC FINGER PROTEIN 118 575 - -
Eupl06g00978 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 576 IPR013083 -
Eupl06g00978 576 SMART ring_2 526 569 IPR001841 -
Eupl06g00978 576 CDD RING-H2_TUL1-like 520 575 - -
Eupl06g00978 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
Eupl06g00978 576 SUPERFAMILY RING/U-box 507 575 - -
Eupl06g00978 576 Pfam Ring finger domain 525 570 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00978 Eupl-Chr6 15999139 16020838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00978 523 575 C3H Transcription Factor Family AT2G17450 37.736 1.47e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00978 K23788 - nnu:104599421 954.125