Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00974 ATGTCGTTGAACAGCCTCAAAGAGACTCTCAGACCTTGCTCCAATATCTCCTCCTCTTCTCATTCACAACGCTCTGTCTCCCAGGACTTCCAACCAACTACCCTTCAAAGAAAACCCCCAAAGTCCTCTCTTTCTCAGCAGCTCCAACGCATTCAAGACCCTCTCCCTTTCCCTTTCCCGCCAAATTACCCACCAAAACAAAATGAGGAGGAAGAAGAAGAAAGAGAAGAAGAAGCTGGGCTCCCCATTCGTCGCCACCGCAATCGCGGCGAACCTGTCTCTACCCATTTTCAATTTGATCCCACAGGACCCTTTGAGCCCATGATCCTCTCTTCACCGGGTGAAACTCCAGTAGTACAGGTCCCTGCATCTATCAATTGTCGGCTCCTTGAACATCAAAGAGAGGGAGTGAGATTCTTATACGGTTTGTACAAGGACAACCATGGGGGAGTTCTTGGAGATGACATGGGGCTGGGGAAGACCATCCAAACAATTGCATTCCTGGCTGCTGTGCTTGGAAATGATGCAGAACATGTTGACTCCAACATGATCAAAGGGGACCAGATGGGAAAGAAGGGCCCTGTATTGATTGTTTGCCCCACTTCCATTATTCACAATTGGGAAAATGAATTTTCTAAATGGGGAAATTTTAGTGTTTCTGTTTATCATGGACCCACTCGTGATCTGATTCTCGAGAAACTAGAAGCACATGATATCGAGATACTTATAACCAGTTTTGATACCTTCAGAATTCATGGGACACTGTCAGAGGTTCAGTGGGATATTGTGATAGTTGACGAGGCACACCGACTAAAGAATGAAAAATCAAAACTCTATGGAGCCTGTTCGGGAATTAAAACCAGAAAACGCTTTGGTCTTACCGGAACCATAATGCAGAATAAAATTTTGGAGCTGTTCAATCTGTTTGATTGGGTTGCACCTGGATCCCTGGGGACACGAGAACATTTTCGAGATTTCTATGATGAACCACTCAAGCACGGTCAAAGGTCTAGTGCTCCTGAAAGGTTTGTCCAGGTTGCTGATGAGCGCAAGCAGCACCTAGTAGCAGTTCTTCGTAGATATCTGTTAAGAAGGACCAAGGAGGAGACTATTGGGCATCTTATGATGGGAAAGGAAGATAATGTTGTGTTTTGTGCAATGAGTGAGGTACAAAAGCGCGTATACAGAAGGATGTTACAGCTACCAGATATCCAATGTCTTATAAATAAGGACCTCCCCTGTAGCTGCGGAAGCCCTCTAACATCGGTGGAATGTTGCAACAGGATTGTACCAAATGGAATCATGTGGCCCTATCTTCATAGGGACAACCCTGATGGTTGTGATTCATGCCCCTTCTGCCTTGTTCTTCCTTGCCTTATCAAGCTTCAGCAGATAAGCAATCACCTGGAGTTGATTAAGCCTAATGCTAGAGATGACATTGATAAACAAAGGAAAGATGCAGAATTCGCTGCTGCTGTCTTTGGTACTGATGTTGATCTGGTCGGGGGCTTTACTCAGAGTGAGAGTTTCATGGGCCTTAGCAACGTTGAGCACTGCGGAAAAATGAGAGTATTGGAAAGGTTAATGTTATCATGGATTTCACAGGGTGACAAAATTCTTCTATTCAGCTATTCTGTCAGGATGCTGGACATACTGGAAAAGTTTCTCATACGTAAAGGTTATTGCTTCTCCAGACTCGATGGTTCAACCCCAACGAGCTCCCGCCAGTGCCTTGTTGATGACTTCAACGCAAGTCCAAGCAAACAGGTGTTCCTTATATCAACTCGAGCTGGTGGGCTGGGTCTGAATCTCGTCAGTGCAAATCGTGTTGTAATATTTGATCCAAATTGGAATCCTGCCCAAGACTTACAGGCCCAGGACAGGTCCTTTCGTTATGGGCAGAAACGACATGTTGTAGTTTTTCGCCTTCTTGCTGCTGGTTCCCTCGAGGAACTTGTATATTCCCGTCAGGTGTATAAACAGCAGCTATCAAACATTGCCGTGTCAGGAAAAATGGAAAAGCGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTCAAGGCGAGCTTTTTGGAATCTCCAATCTATTTCGTGATCTGTCCGATAAGCTTTTTACCAGTGAAATCATTGGAGTGCATGAAAAAAGGGAACAAGGATATGGGTATCATAATGGTACAAAACGAGATCCAACCAAAGTTGGGAAAGATATTCCTTCAAGTGAAACATTAGTGACAGGTTCTGAAGCTAGAAAATCTGATGACTTGGACATTGCTACTACAAATAACCCAATGCTTGAAGACTTGGGCATTGTATACGCTCATCGCAATGAAGACATCGTCAACTTTCAACCTGAGCTTCAGGTGAAGAAAGATGTGAGTGTGTCTCTGTCCAAGGATGATAGCATGAAGCAGCAGTGTGGCCCCACTTTAGGAAAAAGTTGTGCAGATGGAACCTCAAGAGTTGGTGAGAAAACCAAAAGGCAGAAGAAGAACCAATACAGCCTTATCGCTCAGTTTATGGGTATGGAAGAAGTTGAGTTCAGCAAGTGGTTGCTATCTGCATCATATTCAGATCGGGAAAAAGTGCTTCGAGACTACAAGAAGCAAAAGGAGAAGATGCAAGGTGGTTGA 2631 0.4443 MSLNSLKETLRPCSNISSSSHSQRSVSQDFQPTTLQRKPPKSSLSQQLQRIQDPLPFPFPPNYPPKQNEEEEEEREEEAGLPIRRHRNRGEPVSTHFQFDPTGPFEPMILSSPGETPVVQVPASINCRLLEHQREGVRFLYGLYKDNHGGVLGDDMGLGKTIQTIAFLAAVLGNDAEHVDSNMIKGDQMGKKGPVLIVCPTSIIHNWENEFSKWGNFSVSVYHGPTRDLILEKLEAHDIEILITSFDTFRIHGTLSEVQWDIVIVDEAHRLKNEKSKLYGACSGIKTRKRFGLTGTIMQNKILELFNLFDWVAPGSLGTREHFRDFYDEPLKHGQRSSAPERFVQVADERKQHLVAVLRRYLLRRTKEETIGHLMMGKEDNVVFCAMSEVQKRVYRRMLQLPDIQCLINKDLPCSCGSPLTSVECCNRIVPNGIMWPYLHRDNPDGCDSCPFCLVLPCLIKLQQISNHLELIKPNARDDIDKQRKDAEFAAAVFGTDVDLVGGFTQSESFMGLSNVEHCGKMRVLERLMLSWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTSSRQCLVDDFNASPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRYGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIGVHEKREQGYGYHNGTKRDPTKVGKDIPSSETLVTGSEARKSDDLDIATTNNPMLEDLGIVYAHRNEDIVNFQPELQVKKDVSVSLSKDDSMKQQCGPTLGKSCADGTSRVGEKTKRQKKNQYSLIAQFMGMEEVEFSKWLLSASYSDREKVLRDYKKQKEKMQGG* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00974 876 MobiDBLite consensus disorder prediction 1 52 - -
Eupl06g00974 876 SMART helicmild6 550 633 IPR001650 -
Eupl06g00974 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 365 IPR027417 -
Eupl06g00974 876 Pfam Helicase conserved C-terminal domain 522 633 IPR001650 -
Eupl06g00974 876 Gene3D - 108 364 IPR038718 -
Eupl06g00974 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 315 IPR014001 -
Eupl06g00974 876 MobiDBLite consensus disorder prediction 1 83 - -
Eupl06g00974 876 MobiDBLite consensus disorder prediction 720 735 - -
Eupl06g00974 876 PANTHER SNF2/RAD54 FAMILY MEMBER 18 837 - -
Eupl06g00974 876 CDD SF2_C_SNF 518 644 - -
Eupl06g00974 876 Gene3D - 377 708 IPR027417 -
Eupl06g00974 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 677 IPR001650 -
Eupl06g00974 876 SMART ultradead3 125 323 IPR014001 -
Eupl06g00974 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 688 IPR027417 -
Eupl06g00974 876 MobiDBLite consensus disorder prediction 720 739 - -
Eupl06g00974 876 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 110 364 - -
Eupl06g00974 876 Pfam SNF2-related domain 145 405 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00974 Eupl-Chr6 15933402 15944064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00974 536 663 RAD5 or RAD16-like Gene Family AT1G11100 36.719 5.29e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl06g00974 SNF2_N 3.8e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00974 K20098 - ming:122092835 1330.47