Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00946 ATGGCGGGGAGTTCAGGCTTTGGATCTTTAGCGACCGCTCCCTCTGCCATGATCGACACCAACACACCAGCTGCAGATCTAGCTTACACGAATTTTGCTTATTGTTCATCTTCAGATCTTCGGAAGTTTTTGGTTCCCCGATCGAAGCTCGCTCTCGCATTGATTGATGCTGTTCTTCTGGCTCAACAACTTCGGAAGAGATTCATTGATCAGGTTATGACTGCAGGACAAAGGGTATCGTTTGAATATCATGGTACCACCTACATCTTTACAGTCAGTCAGGCTATTGTAGAGGGGCAGGAAAAAACCCTCGAGAGAGGTATGCTATCGAATGAAACGTATTTTGTGTTTGAAGCATCGAACGCCAGTGGTATCAAGATTGTAAACCAGCGTGAATCCACCAGCAGCAACATATTTAGGCAGAAGGAGTTTAATCTTCAGTCACTGGGTATAGGTGGTCTAAGTGCAGAGTTTGCAGATATATTTCGAAGAGCATTTGCCTCTCGAGTTTTTCCTCCCCATGTGACGAATAAATTGGGCATCAAGCATGTCAAGGGAATGCTGCTTTATGGGCCACCTGGTACTGGCAAGACTCTAATGGCACGGCAGATTGGTAAAATGCTAAAAAAATGGAATGGAACCAAAGGTATAGACATGGCTCCATTATTGATTGTTAATGGGCCTGAAGTGTTAAGCAAGTTTGTTGGTGAAACTGAAAAGAATGTAAGAGATCTATTTGCTGATGCTGAGAATGACCAAAGGACTAGAGGGGATCAAAGTGACTTGCACGTTATCATCTTTGATGAAATTGATGCTATTTGTAACTGTTCAAGAGGATCAACTAGAGATGGTACTGGAGTTCATGATAGTATTGTGAATCAGCTTCTTATGAAGATAGATGGTGTGGAGTCTTTGAATAATGTTTTGCTGATTGGAATGACCAACAGAAAGGATTTGCTTGATGAAGCTGTTTTGAGGTAA 981 0.4241 MAGSSGFGSLATAPSAMIDTNTPAADLAYTNFAYCSSSDLRKFLVPRSKLALALIDAVLLAQQLRKRFIDQVMTAGQRVSFEYHGTTYIFTVSQAIVEGQEKTLERGMLSNETYFVFEASNASGIKIVNQRESTSSNIFRQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTNKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLKKWNGTKGIDMAPLLIVNGPEVLSKFVGETEKNVRDLFADAENDQRTRGDQSDLHVIIFDEIDAICNCSRGSTRDGTGVHDSIVNQLLMKIDGVESLNNVLLIGMTNRKDLLDEAVLR* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00946 326 SUPERFAMILY Cdc48 domain 2-like 32 132 IPR029067 -
Eupl06g00946 326 SMART AAA_5 183 325 IPR003593 GO:0016887
Eupl06g00946 326 PANTHER VESICULAR-FUSION PROTEIN NSF 55 326 IPR039812 GO:0016887|GO:0035494
Eupl06g00946 326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 326 IPR027417 -
Eupl06g00946 326 FunFam Vesicle-fusing ATPase 46 127 - -
Eupl06g00946 326 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Eupl06g00946 326 Gene3D - 42 127 - -
Eupl06g00946 326 Pfam Cell division protein 48 (CDC48), domain 2 55 95 IPR004201 -
Eupl06g00946 326 Gene3D - 135 326 IPR027417 -
Eupl06g00946 326 Pfam ATPase family associated with various cellular activities (AAA) 187 326 IPR003959 GO:0005524|GO:0016887
Eupl06g00946 326 FunFam Vesicle-fusing ATPase 1 140 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00946 Eupl-Chr6 15465665 15475928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00946 178 326 Calmodulin-binding Proteins AT3G56690 39.597 4.86e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00946 K06027 - twl:119988394 448.743