Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00928 ATGCTGACTCGTATGCTTTGTTATCAAACTAATATTTTGATCTCCAATCAAGAATTCAAAAGTCCTAACCTTGTTATCCTTCTATCTTTTGTGTTCCTCAGATTGAAGAACTGGTATCTTAAAAGTATACATACAGAGCACATGGCTATGGAACAATACTTCCGAGAAGCCGTGGCACACCACGAGGTGGATGGAGATGGATCACCACCCCAGAAGTGGAAACCTGTCTCGGTTGCAGCTACAGCTACAGCTACAGCTTCGGATAATGTTAATGGCTGCTTTGACTGCAACATCTGCCTAGACAATGCCCAGGACCCAGTGGTCACTCTCTGCGGCCACCTATACTGCTGGCCGTGTATTTACAAGTGGCTCCATTTCCAGAGCGCTTCCACTGCCTCAGAACAGAAGCAGCAACAGTGCCCAGTTTGCAAGGCCAACATCTCCCACACTACACTGGTTCCTCTCTATGGTCGGGGCCAGTCCTCCCCGCAAACCGAACCTGAAGGCAAAGGGCCCTTCCCAGGTCTATACATACCGCGTAGACCTCCGGCCTGTGCGGCTGATGCCCCGATAACTACTACGTCACCTCCTAATCAGCAGTATCATCGTAATCCTTATCAATCCCAGGCACAACAATATTACCCTCAATATTACAACAATTACCCAGAGGGAGAAGTAGGGATGGGGGCGACGACATCAACGACAAGTGTCTTCCATCCGATGGTAGGGATGTTTGGGGAGATGGTATATGCAAGAGTGTTTGGGAATTCGGAGGCAAGTTTGTATGGGTATCCGAATTCGTATCACCTTATAGGTAGTAGTAGTCCCCGGGTGAGAAGGCAAGAAATGCAGGCAGAGAAGTCACTTAGCAGAATTTCATTCTTCCTCTTCTGTTGCTTTGTTTTGTGCCTTCTCTTGTTCTGA 924 0.4794 MLTRMLCYQTNILISNQEFKSPNLVILLSFVFLRLKNWYLKSIHTEHMAMEQYFREAVAHHEVDGDGSPPQKWKPVSVAATATATASDNVNGCFDCNICLDNAQDPVVTLCGHLYCWPCIYKWLHFQSASTASEQKQQQCPVCKANISHTTLVPLYGRGQSSPQTEPEGKGPFPGLYIPRRPPACAADAPITTTSPPNQQYHRNPYQSQAQQYYPQYYNNYPEGEVGMGATTSTTSVFHPMVGMFGEMVYARVFGNSEASLYGYPNSYHLIGSSSPRVRRQEMQAEKSLSRISFFLFCCFVLCLLLF* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00928 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 52 304 IPR045103 GO:0005783|GO:0006511|GO:0061630
Eupl06g00928 307 Pfam Zinc finger, C3HC4 type (RING finger) 96 143 IPR018957 GO:0046872
Eupl06g00928 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 157 IPR013083 -
Eupl06g00928 307 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Eupl06g00928 307 SMART ring_2 96 143 IPR001841 -
Eupl06g00928 307 ProSiteProfiles Zinc finger RING-type profile. 96 144 IPR001841 -
Eupl06g00928 307 SUPERFAMILY RING/U-box 95 150 - -
Eupl06g00928 307 CDD RING-HC_AtRMA-like 94 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00928 Eupl-Chr6 14998742 15002830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00928 81 293 C3H Transcription Factor Family AT4G27470 43.981 1.39e-53 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00928 K10666 - nnu:104608240 296.975