Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00927 ATGGCGACCGTTACAGTTCCTTGTACTCTTTTGCTTTGGCATTTTTTCTTCTTTGGGGCCGTTGTTTTCAAGGGAATCAACGGTCAACATAACGGTTGGTTCAGTGGTCATGCAACTTTCTATGGAGCCTCTCAAAGCCCCACCTCCCTAGGAGGAGCTTGTGGTTATGACAACACCTTTGAAGCGGGATTCGACGTAAATACTGCAGCATTGAGTGGTGCACTGTTCAGATCGGGTCAAGCTTGTGGTGCATGCTATCAAGTCATGTGCAATATGCGAGACGACCCGAAATGGTGCCTCCGGCGTGCGGTCGTAACCGTCACCGCCACTAATTTCTGTCCTCCAAACAACAATGGAGGGTGGTGTGATCTCCCTCGTCAGCACTTTGACATGTCCATGCCTGCTTTCTTTCGCATTGCACGCCCAGGCAACGAAGGCATAATTCCTGTTCTCTATAGAAGGGTACCATGCAAAAGGAGGGGCGGGGTCCGTTTCACATTGAAGGGCCAATCGAATTTCAATATGGTGATGATCTCGAATGTCGGCGGGAGCGGTGACGTTAAAGCCGCATGGATTAAGGGATCTAAAACAAGAGCATGGGTGCCAATGAGAAGGAATTGGGGTGCGAATTGGCAAAGCAACATCGATGTTAGGAGCCAAATCCTCTCTTTTAGACTCACATTAGTCGACGGAAAAACCCTGGAGTTCTCCAACGTCGTCCCTTCGACATGGCAGTTTGGACAAACTTTTGCTTCCCAACATCAGTTTTCTTAG 774 0.4897 MATVTVPCTLLLWHFFFFGAVVFKGINGQHNGWFSGHATFYGASQSPTSLGGACGYDNTFEAGFDVNTAALSGALFRSGQACGACYQVMCNMRDDPKWCLRRAVVTVTATNFCPPNNNGGWCDLPRQHFDMSMPAFFRIARPGNEGIIPVLYRRVPCKRRGGVRFTLKGQSNFNMVMISNVGGSGDVKAAWIKGSKTRAWVPMRRNWGANWQSNIDVRSQILSFRLTLVDGKTLEFSNVVPSTWQFGQTFASQHQFS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00927 257 SUPERFAMILY Barwin-like endoglucanases 16 180 IPR036908 -
Eupl06g00927 257 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Eupl06g00927 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 162 IPR007112 -
Eupl06g00927 257 SMART dpbb_1 68 152 IPR007112 -
Eupl06g00927 257 CDD DPBB_EXPA_N 32 157 - -
Eupl06g00927 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 92 103 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Eupl06g00927 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Eupl06g00927 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Eupl06g00927 257 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Eupl06g00927 257 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Eupl06g00927 257 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Eupl06g00927 257 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Eupl06g00927 257 Pfam Lytic transglycolase 68 152 IPR009009 -
Eupl06g00927 257 Gene3D - 162 257 IPR036749 -
Eupl06g00927 257 PANTHER EXPANSIN-A15 20 255 IPR002963 GO:0009664
Eupl06g00927 257 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Eupl06g00927 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Eupl06g00927 257 Gene3D - 23 158 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00927 Eupl-Chr6 14981573 14983631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00927 31 253 Expansin Gene Family AT3G15370 61.660 6.45e-111 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00927 - - csin:114286350 436.417