Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00909 ATGACTCGGGTCCACCATCTCATGGATCGGGTCATTACGATAAGTTCTGGCATATGTGAACAGATTTGGGGGAACATAACGTTAAAGGAAGACAGACTACGAGATACGAGATACCAGAGAATCCGAGATAAAGTCAGGAATCACGGCAAAGCCCCTTTCATACACAAGGGGCCCCATATATATCAAATAAAAACAATAATAACAGAAGAAAGATCTATTACTGGAATGACCAAAACAACCCCACTGTCCCACCCTAAAAACATCAAAAATTCCAGACCGTTACCCGGAATCAACGCCTTAACCGTCGGGTGGGCCCAACTAAATGCCATTTTTTCTAAAAGGAGGGTCCATCTTCTCCTCGTTCTCTCCGTTGGTCGGAAATCTGACCCACACAAACTAACCATTGCGCGCCGCCTGACGCATCCGACTCACAAGATGCAGCGCCATTGTTGCTCCGGCCTATGTCTCGTTCTTTCCTTTGTTTTCGTCTTTACTTCTCTGTTTATCTCGGCGCAATCATTGTACCCCGTGGCTGACCCACATTGGCGTCCTGCTACCGCCACTTGGTACGGCAGTCCCGAAGGCGACGGCAGCGACGGGGGAGCATGTGGTTACGGGTCGTTAGTGGACGTAAAACCGTTAAGGACGAGGGTAGGTGCCGTTAGCCCAGTGCTCTTTAAAGATGGGGAAGGGTGTGGGGCGTGTTACAAGGTGAAGTGTTTAGACAAGCAGATTTGTTCGAGGAGAGCCGTTACCGTTATCATAACGGACGAGTGCCCTGGCTGCGCACCAGGCCGTGCGCACTTTGACCTTAGTGGCGCTGTTTTTGGTCGGCTGGCCATTTCCGGGTACAGCACAGGGCTCAGGAACCGAGGCGAGATCTCAGTCATCTTCCGACGGACACCATGCAAATACCATGGAAAGAATGTTGCATTCCATGTGAATGAAGGATCAACCGAGTACTGGCTAGCGCTTCTAGTAGAGTACGAAGACGGCGACGGAGACATAGGGTCGATGCACATAAAAGAAGCAAGTTCGACTGAGTGGCTGGAGATGAAGCACTTATGGGGGGCAAATTGGTGCATTATTGGGGGACCCTTGAAAGAAATGCTATCGAATATCCATGATCGGGATAAGAGGCAGATATGGTGGAGAAATTGTTTGTCCCCCTTTGTGAACAAGGAATGTGGAAAGATAGGTCCCAAAAAGATAGCCACTGGATGGTCTAAAAAGCTAATTCTTTGTGATTCGCATTTCCCAAGTAAAACTGGAGATGTGCTTTCTTGGCCGAGAAAAGGCGTGAATCTTGTTGATGATTACGCCTAA 1326 0.4887 MTRVHHLMDRVITISSGICEQIWGNITLKEDRLRDTRYQRIRDKVRNHGKAPFIHKGPHIYQIKTIITEERSITGMTKTTPLSHPKNIKNSRPLPGINALTVGWAQLNAIFSKRRVHLLLVLSVGRKSDPHKLTIARRLTHPTHKMQRHCCSGLCLVLSFVFVFTSLFISAQSLYPVADPHWRPATATWYGSPEGDGSDGGACGYGSLVDVKPLRTRVGAVSPVLFKDGEGCGACYKVKCLDKQICSRRAVTVIITDECPGCAPGRAHFDLSGAVFGRLAISGYSTGLRNRGEISVIFRRTPCKYHGKNVAFHVNEGSTEYWLALLVEYEDGDGDIGSMHIKEASSTEWLEMKHLWGANWCIIGGPLKEMLSNIHDRDKRQIWWRNCLSPFVNKECGKIGPKKIATGWSKKLILCDSHFPSKTGDVLSWPRKGVNLVDDYA* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00909 441 CDD DPBB_EXPB_N 182 303 - -
Eupl06g00909 441 Gene3D - 169 303 IPR036908 -
Eupl06g00909 441 PRINTS Major pollen allergen Lol pI signature 280 295 IPR005795 GO:0005576|GO:0019953
Eupl06g00909 441 PRINTS Major pollen allergen Lol pI signature 328 343 IPR005795 GO:0005576|GO:0019953
Eupl06g00909 441 PRINTS Major pollen allergen Lol pI signature 220 231 IPR005795 GO:0005576|GO:0019953
Eupl06g00909 441 PRINTS Major pollen allergen Lol pI signature 258 273 IPR005795 GO:0005576|GO:0019953
Eupl06g00909 441 PRINTS Major pollen allergen Lol pI signature 312 327 IPR005795 GO:0005576|GO:0019953
Eupl06g00909 441 Gene3D - 304 390 IPR036749 -
Eupl06g00909 441 PRINTS Expansin/Lol pI family signature 181 196 IPR007118 GO:0005576
Eupl06g00909 441 PRINTS Expansin/Lol pI family signature 199 217 IPR007118 GO:0005576
Eupl06g00909 441 PRINTS Expansin/Lol pI family signature 291 307 IPR007118 GO:0005576
Eupl06g00909 441 PRINTS Expansin/Lol pI family signature 222 240 IPR007118 GO:0005576
Eupl06g00909 441 PRINTS Expansin/Lol pI family signature 349 363 IPR007118 GO:0005576
Eupl06g00909 441 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 321 360 IPR007117 -
Eupl06g00909 441 SUPERFAMILY Barwin-like endoglucanases 170 307 IPR036908 -
Eupl06g00909 441 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 200 308 IPR007112 -
Eupl06g00909 441 Pfam Expansin C-terminal domain 310 372 IPR007117 -
Eupl06g00909 441 SUPERFAMILY PHL pollen allergen 308 372 IPR036749 -
Eupl06g00909 441 SMART dpbb_1 218 298 IPR007112 -
Eupl06g00909 441 FunFam Expansin B3 169 304 - -
Eupl06g00909 441 PANTHER EXPANSIN-B3 162 362 - -
Eupl06g00909 441 Pfam Lytic transglycolase 220 295 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00909 Eupl-Chr6 14678125 14688224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00909 154 362 Expansin Gene Family AT4G28250 65.550 3.35e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00909 K20628 - nnu:104586432 369.777