Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00902 ATGTCTGGTTACGATGGCCGGTACGACCGCAATGGTGAGGGCTACAAAGGAGGTGATCACGGCGGATCTTCCCCGTACGATATGTTTGAAGATCGAGACTCGCACCACAAGCTCAATTCTCGTGGATCAGATCACGAGAAGTCGCGAATTAAAGAAAGGGATCGGGACAGGGAAAAAGATCGGGACCGCCATCATAGGGACAAGGATAGAAGTGTGAGGGATGAAAGAGGAAGGGACAAATCTGATGATTATGACCGTCATCGGAGTCGTGATTATGACAGGCAGCGGGATTATGATAGAGAAAAGGATAGGAGACAGAGACGTAGATCAAGCTCCCGTTCAAGGGATAGATCTAGGAATCGATCTAGATCACGGTCACGTTCCCGTTCCCGTTCAAAGAGCAAACGGGCAAGTGGTTTTGATATGGCACCGCCCGGTGCTGCTGTGCTGCCTGGTGCTACGGTTCCAGGGCAACAGCCAGGTATTCCTCAGCCAATGCCAGGAATGTTACCAAACATGTTTCCTTTTGGGACCACACAGTTTGGAGCTCTTCCTTTGATGCCAGCACAAGCCATGACGCAGCAGGCTACAAGGCACGCACGCCGAGTATATGTTGGTGGCCTTCCTCCCATGGCCAATGAGCAGACAATTGCAACGTTTTTTAGCCGTGTTATGGCTGCTATTGGAGGGAATAGTGCTGGTCCAGGTGATGCTGTAGTCAATGTCTACATTAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGAGAACTGTTGAAGAAGCAAGTAATGCAATGGCATTAGATGGGATAATGTTTGAGGGGGTCTCTGTGAGGGTCCGAAGGCCTACTGATTACAACCCTTCATTGGCTGCAGCACTTGGGCCTAGCCAACCAAATCCTCTTCTCAACTTAGCTGCTGTTGGTCTCACACCAGGTGCAATGGGTGGAGCAGAGGGACCCGACCGTATATTTGTAGGTGGATTGCCATACTACTTCACAGAAGCACAGATAAGGGAACTGCTGGAGTCCTTTGGACCTCTGCGTGGATTTGACCTTGTTAAGGATAGGGACACGGGAAATTCAAAAGGTTATGGTTTCTGTGTGTATCAGGATCCAGCGGTGACAGATATTGCTTGTGCTGCTCTTAATGGTCTGAAAATGGGTGATAAGACTCTAACCGTCCGCCGCGCTACTGCGAGCAGTGGGCAGACAAAAGACCAGGAAAACATATTACAACAGGCACAACAGCATATAGCTATGCAGAAAATGGTCCTGCAGGCTGGTGGTGCAAATTTTCATGGATTTGGAATGGCAGCCGAAGAGGCTCCAGAGTTTCCAACTAAAGTTGTCTGTTTGACTGAGGTGGTAACTGCTGATGAGCTGAGGGATGATGAAGAGTATAACGATATATTAGAGGACATGAGGGAAGAAGGCGGAAAGTTTGGGTCCTTGGTGAATGTTATTATCCCTCGCCCAAATGCAAATGAAGAGGAGTCCCCAGGAGTTGGAAAGGTGTTCTTGGAGTATTTGGACACTTCAGGTTCTGCGAGGGCAAAGGCTGCGCTTCATGGAAGGAAATTCGGAGGCAACGATGTTACCGCTGTCTATTACCCTGAAGACGTATTTTCCAATGGAGACTATGGGGCGTGA 1650 0.4879 MSGYDGRYDRNGEGYKGGDHGGSSPYDMFEDRDSHHKLNSRGSDHEKSRIKERDRDREKDRDRHHRDKDRSVRDERGRDKSDDYDRHRSRDYDRQRDYDREKDRRQRRRSSSRSRDRSRNRSRSRSRSRSRSKSKRASGFDMAPPGAAVLPGATVPGQQPGIPQPMPGMLPNMFPFGTTQFGALPLMPAQAMTQQATRHARRVYVGGLPPMANEQTIATFFSRVMAAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIMFEGVSVRVRRPTDYNPSLAAALGPSQPNPLLNLAAVGLTPGAMGGAEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSGQTKDQENILQQAQQHIAMQKMVLQAGGANFHGFGMAAEEAPEFPTKVVCLTEVVTADELRDDEEYNDILEDMREEGGKFGSLVNVIIPRPNANEEESPGVGKVFLEYLDTSGSARAKAALHGRKFGGNDVTAVYYPEDVFSNGDYGA* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00902 549 CDD RRM2_U2AF65 321 397 - -
Eupl06g00902 549 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 27 547 IPR006529 GO:0003723|GO:0005634|GO:0006397
Eupl06g00902 549 Gene3D - 196 296 IPR012677 -
Eupl06g00902 549 SUPERFAMILY RNA-binding domain, RBD 322 536 IPR035979 GO:0003676
Eupl06g00902 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 399 IPR000504 GO:0003723
Eupl06g00902 549 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 392 IPR000504 GO:0003723
Eupl06g00902 549 SMART rrm1_1 322 395 IPR000504 GO:0003723
Eupl06g00902 549 SMART rrm1_1 455 535 IPR000504 GO:0003723
Eupl06g00902 549 SMART rrm1_1 202 280 IPR000504 GO:0003723
Eupl06g00902 549 SMART rrm2_1 202 280 IPR003954 GO:0003676
Eupl06g00902 549 SMART rrm2_1 450 535 IPR003954 GO:0003676
Eupl06g00902 549 CDD RRM1_U2AF65 200 282 - -
Eupl06g00902 549 CDD RRM3_U2AF65 447 535 - -
Eupl06g00902 549 MobiDBLite consensus disorder prediction 107 133 - -
Eupl06g00902 549 MobiDBLite consensus disorder prediction 1 164 - -
Eupl06g00902 549 FunFam U2 snRNP auxiliary factor large subunit 443 548 - -
Eupl06g00902 549 Gene3D - 443 547 IPR012677 -
Eupl06g00902 549 Gene3D - 318 424 IPR012677 -
Eupl06g00902 549 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 284 IPR000504 GO:0003723
Eupl06g00902 549 SUPERFAMILY RNA-binding domain, RBD 183 286 IPR035979 GO:0003676
Eupl06g00902 549 PANTHER RNA-BINDING PROTEIN 37 547 - -
Eupl06g00902 549 MobiDBLite consensus disorder prediction 25 106 - -
Eupl06g00902 549 FunFam U2 snRNP auxiliary factor large subunit 196 297 - -
Eupl06g00902 549 FunFam U2 snRNP auxiliary factor large subunit 298 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00902 Eupl-Chr6 14578470 14595472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00902 323 413 Eukaryotic Initiation Factors Gene Family AT1G71770 25.275 5.63e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00902 K12837 - psom:113306427 759.214