Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00898 ATGTTTCTTGCTCAGGCACTTGATCTGATCGCTAATGAATCAGGTCGAATCACGATCACGGAGATTCTTTGTAATGTTTTCCGGACTGTGATTGCTACGATGCCTGGGGATTTGATTGCCATTGTTTATCTTTCTGCGAACAAGATTGCTCCTTCTCACCAGGGCGTGGAGCTCGGGATTGGAGATTCGGCCATTATAAAGGCGCTAGCTGAAGCTTATGGAAGGAAGGAGGAGCACATTAAAAACCAGCTCAAGTACTACGGTATCAGAAAGAAGTGTGAAGGGAACCTCTGCTACGATTTCTCAAACATGGAAAAATTCCTGAATCAGAAGTCTATCAGGGATGCTCTCGGAGTTGGGGACATAGAATTCGTCTCATGTAGTCCTACGGTGTACTGGGCCATGCAGATGGACTGGATGAGGAAGTACTGTTTCAGGGATTAA 444 0.4572 MFLAQALDLIANESGRITITEILCNVFRTVIATMPGDLIAIVYLSANKIAPSHQGVELGIGDSAIIKALAEAYGRKEEHIKNQLKYYGIRKKCEGNLCYDFSNMEKFLNQKSIRDALGVGDIEFVSCSPTVYWAMQMDWMRKYCFRD* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00898 147 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 2 88 - -
Eupl06g00898 147 Pfam DNA ligase N terminus 3 95 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl06g00898 147 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 2 88 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl06g00898 147 Gene3D - 1 117 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Eupl06g00898 147 Pfam Serine carboxypeptidase 86 141 IPR001563 GO:0004185|GO:0006508
Eupl06g00898 147 SUPERFAMILY alpha/beta-Hydrolases 80 142 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00898 Eupl-Chr6 14485145 14496231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00898 1 83 Core DNA Replication Machinery Family AT1G08130 69.880 3.70e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00898 K10747 - msin:131228527 152.14