Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00857 ATGGGGATGGCAGAGACCGACCTTATTTCGCAGCTATCGTTGCCGCCGGGATTCCGATTTTATCCGACGGATGAGGAGCTCTTAGTTCAATACTTATGCCGGAAAGTCGCCGGACATCACTTCGCGTTACAGATTATTGGCGAAATAGATCTTTACAAGTTCGATCCATGGGTACTACCCAGTAAAGCTGTATTTGGAGAGAAAGAGTGGTACTTTTTCAGTCCTAGAGATCGAAAATATCCGAACGGGTCGAGACCGAACAGAGTTGCTGGATCGGGTTATTGGAAAGCTACTGGAACTGATAAGGTTATTACGACGGAAGGTCGAAAGGTTGGAATTAAAAAAGCTCTGGTTTTTTACATTGGGAAAGCTCCAAAAGGAACTAAGACAAACTGGATTATGCACGAGTATCGGCTTTCAGAGCCTCAAAAGACGAAGGGGAGCTCTCGGAGCGATGATTCATCATCGGGGTCGCAGCAGCCACAGCTCCCACCCGGCTTCCGGTTTCACCCAACTGATGAAGAGCTTGTTGTTCACTACCTCAAGAAGAAGGCCTCTTCTTCTCCCCTCCCCGTCACGATCATTGCCGAAGTTGATCTCTACAAGTTTGATCCATGGGAGCTCCCTGGCAAAGCGACTTTTGGGGAACAAGAGTGGTACTTCTTTAGTCCTAGAGACCGGAAATACCCTAATGGAGCAAGGCCTAACCGAGCTGCAACGTCTGGGTATTGGAAGGCAACTGGAACTGATAAACCTATCTTAACATCTGATGGGACTCAAAAGGTTGGAGTGAAGAAGGCCCTCGTTTTCTATATTGGGAGGCCACCTAAAGGGATAAAAACAAACTGGATCATGCATGAATATCGACTCGCTGATAACAATAGTAGCATGAAGCCTCCTGCAAGTGACATAGCAACCAAAAAGAGCTCCTTACGGCTCGATGATTGGGTGTTATGCCGGATCTACAAAAAGAACAACTCTCAAAGATCGATAGAGCATGACAAGGAAGATTCCATGGACTACATACTTGCATCACTGCCAACCTTGACAATGGATCGCCAACAGAATCCGAAGCCACAGACTGTAACGGCCACAAATTACGGTGCGTTGCTCGAAAACGATGATAGTTTCTTTGAAGGCCTATTAACCGACGGTATAAACAGCAATTTCATGGCTCAATTGGCTGCTTCGAGCTCAAAGCAATTTCCGGCTGTCAGTACTACCAGCACCTTCCCTCTCAAACGCGCCTTCCCAGGGACTGTGGGTCCTCCAGCAGAGAAGAGGTTCCACGCCAATCACAACAACGACACTACAGATGGAAACAATTCAATCACAGCCGTTCCTCTTCACCATCACCCGCTTCTTGGATCTCTCGGAAACACCGTTTTCCGCATGAATTGGAACTCTTCTTAA 1413 0.4728 MGMAETDLISQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFALQIIGEIDLYKFDPWVLPSKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITTEGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRLSEPQKTKGSSRSDDSSSGSQQPQLPPGFRFHPTDEELVVHYLKKKASSSPLPVTIIAEVDLYKFDPWELPGKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGTQKVGVKKALVFYIGRPPKGIKTNWIMHEYRLADNNSSMKPPASDIATKKSSLRLDDWVLCRIYKKNNSQRSIEHDKEDSMDYILASLPTLTMDRQQNPKPQTVTATNYGALLENDDSFFEGLLTDGINSNFMAQLAASSSKQFPAVSTTSTFPLKRAFPGTVGPPAEKRFHANHNNDTTDGNNSITAVPLHHHPLLGSLGNTVFRMNWNSS* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00857 470 MobiDBLite consensus disorder prediction 141 168 - -
Eupl06g00857 470 FunFam NAC domain-containing protein 72-like 23 157 - -
Eupl06g00857 470 ProSiteProfiles NAC domain profile. 163 324 IPR003441 GO:0003677|GO:0006355
Eupl06g00857 470 Gene3D NAC domain 172 329 IPR036093 GO:0003677|GO:0006355
Eupl06g00857 470 SUPERFAMILY NAC domain 8 150 IPR036093 GO:0003677|GO:0006355
Eupl06g00857 470 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 162 388 - -
Eupl06g00857 470 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Eupl06g00857 470 Pfam No apical meristem (NAM) protein 164 290 IPR003441 GO:0003677|GO:0006355
Eupl06g00857 470 Gene3D NAC domain 23 156 IPR036093 GO:0003677|GO:0006355
Eupl06g00857 470 FunFam NAC transcription factor 56 172 329 - -
Eupl06g00857 470 SUPERFAMILY NAC domain 154 324 IPR036093 GO:0003677|GO:0006355
Eupl06g00857 470 MobiDBLite consensus disorder prediction 149 165 - -
Eupl06g00857 470 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00857 Eupl-Chr6 13806089 13831823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00857 167 470 NAC Transcription Factor Family AT3G15510 51.003 1.36e-105 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl06g00857 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00857 - - nnu:104605624 444.891