LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g00792	ATGAACGAAAAGGCCAACGTTTCCAAAGAGCTCAATGCCAAGCACAAAAAGATACTGGAGGGGCTTCTTAAATTGCCAGAGAACAGGGAGTGTGCTGACTGCAAAAGCAAAGGTCCAAGATGGGCTAGCGTGAATGTGGGAATTTTCATATGCATGCAGTGTTCCGGAATCCACAGAAGTCTTGGGGTGCACATTTCGAAGGTTAGGTCTGCTACGCTAGATACATGGCTTCCAGAGCAGGTTGCATTTATTCAATCAATGGGAAATGAGAAGTCAAATAACTACTGGGAAGCAGAACTGCCCCCAAAATATGACAGAGTTGGGATTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAAAGATGGATTCCGAGGGATGAAAAACCAAAATCACCTTCGAAAGTACGTGAAGAGAGGGCTTCTGTGTATAGGCAGAGACCTGGGGATAAAGGTGGTCATGCATACACCAATAATGCAGAACACTCCTCTGAGGAGCGGGGGAACCTTGCGCCAAATAATAGTGTTCCAGCTACAAAAGCCAGTATTCCTGCTCCTCCTAAAGTATCAGATCAGGTTTCTCCTGATCCAAAACCGGCACCAGTTGTGCAGAAAACAGAACCAGCTGCGCCACAGGCTGAATCAACAACACAGGCAGCTAACGGTACACCAGTCGTCTCACCCCCCAAAGTTGATTTTGCTACTGATCTTTTCAACATGCTATCTATGAATGGACCAAGCGAAAATGGCTCCCAGACATCTTCCCTTGATGATAACGCATGGGCAGGCTTCCAGTCTGCGGAATCAGCATCTTTGACAGAGAAAGTTGGTCCCGCAAAGCCAGTTGAAATTAAGGCCCAATCCTCGTCTGGAATTGAGGATCTATTTAAGGATTCTCTATCAGTCACACCACCTCCAGTTTCAGAGAAACCCCAGAAAGATGTAAAAAATGACATAATGGGCCTTTTTGAAAAGTCCAACATGGTGTTCCCATTTTCCATCCATCAGCAACAACTTGCGATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAGTCCGGTGGTGGGGCCCCAACAATTCCTGTCAATACCCAACAATCTGGCTCCAGTGTTGCCCACACACAAGGCAGCAGCCTGCCTGCTCAAAACTGGCCAAGCCTTGGCTATCAGGCTCCTGGAGTGAGGATGCCAGTAGCCGGACAGAATGAGCTACAGAAATTTATGCAGATGGGAAATGTCAGACCGGCACATGCATCAGGGAAATCTGTTCCTTTTGCAACATCCGGCACGTATACAATGGGGCCAGTTGCTCCAATCAATGGCGTAGCCACCAGTGGAGTGAGTAGGCCTCCCTCGGCGTCTTCTTCTGTCACTCCTACCCGATCAGGAAAAGACTATGACTTCTCATCATTAACACAAGGGATGTTCTCAAAATCCTAG	1446	0.4744	MNEKANVSKELNAKHKKILEGLLKLPENRECADCKSKGPRWASVNVGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKSNNYWEAELPPKYDRVGIENFIRAKYEEKRWIPRDEKPKSPSKVREERASVYRQRPGDKGGHAYTNNAEHSSEERGNLAPNNSVPATKASIPAPPKVSDQVSPDPKPAPVVQKTEPAAPQAESTTQAANGTPVVSPPKVDFATDLFNMLSMNGPSENGSQTSSLDDNAWAGFQSAESASLTEKVGPAKPVEIKAQSSSGIEDLFKDSLSVTPPPVSEKPQKDVKNDIMGLFEKSNMVFPFSIHQQQLAMLAQQQSLLMAAAAKSGGGAPTIPVNTQQSGSSVAHTQGSSLPAQNWPSLGYQAPGVRMPVAGQNELQKFMQMGNVRPAHASGKSVPFATSGTYTMGPVAPINGVATSGVSRPPSASSSVTPTRSGKDYDFSSLTQGMFSKS*	482

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g00792	481	CDD	ArfGap	19	117	-	-
	Eupl06g00792	481	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	16	130	IPR001164	GO:0005096
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	208	223	-	-
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	125	227	-	-
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	356	380	-	-
	Eupl06g00792	481	Gene3D	Arf GTPase activating protein	1	131	IPR038508	-
	Eupl06g00792	481	SUPERFAMILY	ArfGap/RecO-like zinc finger	15	124	IPR037278	-
	Eupl06g00792	481	SMART	arf_gap_3	16	130	IPR001164	GO:0005096
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	156	179	-	-
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	125	146	-	-
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	443	481	-	-
	Eupl06g00792	481	FunFam	stromal membrane-associated protein 1 isoform X1	1	128	-	-
	Eupl06g00792	481	Pfam	Putative GTPase activating protein for Arf	17	123	IPR001164	GO:0005096
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	360	380	-	-
	Eupl06g00792	481	PRINTS	HIV Rev interacting protein signature	68	89	IPR001164	GO:0005096
	Eupl06g00792	481	PRINTS	HIV Rev interacting protein signature	47	64	IPR001164	GO:0005096
	Eupl06g00792	481	PRINTS	HIV Rev interacting protein signature	28	47	IPR001164	GO:0005096
	Eupl06g00792	481	MobiDBLite	consensus disorder prediction	447	481	-	-
	Eupl06g00792	481	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5	1	480	IPR044520	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g00792	Eupl-Chr6	12737081	12747947	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g00792	16	123	C2H2 Transcription Factor Family	AT4G05330	46.552	1.73e-28	113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g00792	K12486		-	nnu:104605670	678.322