Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00786 ATGAACGATCTATTCTCGAGTTCATTCAAGAAGTACACGGACCTGAAGCAGCAGGCCTACCTCGACATGGAGGCCGGTGGAGAAGCCGGGAAGGAGAGTATAAACCTCGACAGATTCTTCGACGATGTCGAGAATGTCAAGGATGACATGAGAAATGTCGAGAAGCTCTACAAGAAATTACAGGAATCCAATGAGGAGAGCAAGACCGTTCACAATGCTAAAAGGGTGAAGGAGCTCCGAGCCCGTATGGATGCAGATGTCGAACAGGTGTTGAAACGAGCGAAAGTCATCAAGGGGAAGCTTGAGGGACTTGAACGCTCCAATGCTGCTCATCGGAACCTTCCTGGGTGTGGGCCCGGGAGCTCCGCTGATCGTACACGGACATCCGTGGTGGGTGGATTGGGGAAGAAGCTGAAGGACATGATGGATGATTTCCAGGAGTTACGAGCCAAGATAACAGCGGAGTACAAAGAAACGGTGGAGCGAAGGTACTACACTATCACAGGGGAGAAAGCAGATGAAGGGACAATTGAGAACTTGATATCAAGTGGGGAGAGTGAATCATTCCTACAAAAGGCCATCCAGAACCAGGGTCGGGGTCAGATCTTGGATACTATTTCAGAAATCCAAGAACGTCATGATGCTGTAAAGGAGATAGAGAAGAACCTGGTCGAGCTCCACCAGGTTTTCTTAGACATGGCTGCCCTAGTGGAGGCCCAGGGTCAGCAGCTTAATGACATTGAAAGTCATGTAGCCCATGCCAACTCGTTTGTCCAACGAGGGACTGAACAGCTCCAGGTGGCCAAGGAGTACCAAAAGAGCTCAAAGAAGTGGACGTGCATTGCCATAAGTCTCGGCGCTGGCACCATCATTTTCCTTGTTATACCAATCTTATCATCTCTGAGGCCCTATTAG 915 0.4962 MNDLFSSSFKKYTDLKQQAYLDMEAGGEAGKESINLDRFFDDVENVKDDMRNVEKLYKKLQESNEESKTVHNAKRVKELRARMDADVEQVLKRAKVIKGKLEGLERSNAAHRNLPGCGPGSSADRTRTSVVGGLGKKLKDMMDDFQELRAKITAEYKETVERRYYTITGEKADEGTIENLISSGESESFLQKAIQNQGRGQILDTISEIQERHDAVKEIEKNLVELHQVFLDMAALVEAQGQQLNDIESHVAHANSFVQRGTEQLQVAKEYQKSSKKWTCIAISLGAGTIIFLVIPILSSLRPY* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00786 304 Gene3D - 199 300 - -
Eupl06g00786 304 Gene3D - 36 163 - -
Eupl06g00786 304 SMART SynN_4 31 157 IPR006011 GO:0016020
Eupl06g00786 304 Coils Coil 43 70 - -
Eupl06g00786 304 CDD SynN 36 193 IPR006011 GO:0016020
Eupl06g00786 304 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Eupl06g00786 304 Pfam SNARE domain 243 287 IPR000727 -
Eupl06g00786 304 CDD SNARE_syntaxin1-like 205 266 - -
Eupl06g00786 304 SMART tSNARE_6 201 268 IPR000727 -
Eupl06g00786 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
Eupl06g00786 304 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Eupl06g00786 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 33 163 - -
Eupl06g00786 304 FunFam Syntaxin 132 199 299 - -
Eupl06g00786 304 PANTHER SYNTAXIN 44 290 IPR045242 -
Eupl06g00786 304 Pfam Syntaxin 38 241 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00786 Eupl-Chr6 12689870 12691766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00786 1 301 SNARE and Associated Proteins AT1G61290 76.744 1.23e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00786 K08486 - nnu:104612627 501.13