Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00762 ATGCATATATTGGATGGGTTTTATGTTTTATTTGCAGATTGGTGGATTACTGTTCTCCTTTTTCTTGCTATTACATTTCTTGCAATGGCAGATGGTCATGAGACTGATAAGAACATTGAGATATGGAAGATCAAGAAATTGATCAAAGCACTGGAAGCTGCCAGAGGCAATGGTACTAGCATGATTTCTCTTATCATGCCTCCCCGTGATCAGATATCTCGGGTCACTAAGATGTTGGGCGATGAATTTGGTACTGCTTCAAACATTAAAAGCAGAGTTAATCGTCAGTCAGTGTTGGGTGCCATCACCTCTGCTCAGCAGAGGCTGAAGCTTTACAATAAGGTTCCTCCCAATGGTTTGGTGCTATACACTGGAACCATTGTGACTGACGATGGGAAGGAAAAGAAGGTCACGATTGATTTTGAGCCTTTCAAGCCCATAAATGCATCACTTTACCTCTGTGATAACAAGTTCCATACAGAGGCTCTGAATGAACTCTTAGAATCCGATGATAAGTTTGGCTTTATAGTCATGGATGGGAATGGTACCCTTTTTGGGACATTAAGTGGCAACACCCGTGAAGTCCTTCACAAGTTCACTGTTGATCTCCCAAAGAAGCATGGTAGAGGAGGACAGTCTGCTCTTCGATTTGCTCGACTTCGGATGGAGAAACGCCACAATTATGTGAGGAAAACAGCCGAGCTCGCCACACAGTTCTTCATCAATCCAGCCACCAGCCAGCCCAATGTTGCAGGATTAATCCTTGCTGGATCTGCTGACTTCAAGACAGAGCTGAGCCAGTCCGATATGTTTGATCCGCGTCTCCAGGCTAAGATACTGAACGTGGTTGATGTTTCTTACGGAGGTGAGAATGGTTTCAATCAGGCCATTGAGCTGTCCTCAGAGATTCTATCCAATGTGAAATTCATTCAGGAGAAGCGCTTGATTGGGAAGTACTTTGAGGAGATCAGCCAGGATACTGGGAAGTATGTATTCGGTGTGGATGACACGCTGAAAGCACTGGAAATGGGTGCAGTCGAGACGCTCATTGTATGGGAAAATCTGGATATTAACAGATACGTGTTGAAGAACAGCGTTACTGGTGAAATAATCATAAAGCACTTGAACAAGGATCAAGAGGCCGACCAGAGCAACTTCCGGGATCCAGCTGCCTCAGCAGAATTGGAGGTTCAGGAAAAGATGGCACTGCTGGAGTGGTTTGCCAATGAGTACAAGCGGTTTGGTTGCACTCTTGAGTTTGTCACCAATAAATCCCAGGAGGGCTCCCAGTTCTGCAGAGGGTTTGGTGGCATTGGTGGTATCCTCCGTTACCAGCTTGATATGAGATCGTTTGATGAGCTGTCTGATGACGGAGAAGTTTATGGAGATTCTGATTAG 1398 0.4514 MHILDGFYVLFADWWITVLLFLAITFLAMADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNSVTGEIIIKHLNKDQEADQSNFRDPAASAELEVQEKMALLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDDGEVYGDSD* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00762 465 SMART eRF1_1_2 32 168 IPR005140 -
Eupl06g00762 465 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 33 457 IPR004403 GO:0003747|GO:0006415
Eupl06g00762 465 Pfam eRF1 domain 3 309 446 IPR005142 -
Eupl06g00762 465 Gene3D eRF1 domain 1 27 163 IPR024049 -
Eupl06g00762 465 Pfam eRF1 domain 1 46 166 IPR005140 -
Eupl06g00762 465 FunFam Eukaryotic peptide chain release factor subunit 1 164 305 - -
Eupl06g00762 465 Gene3D - 307 465 IPR029064 -
Eupl06g00762 465 Gene3D eRF1 domain 2 164 305 IPR042226 -
Eupl06g00762 465 Pfam eRF1 domain 2 172 305 IPR005141 -
Eupl06g00762 465 NCBIfam peptide chain release factor aRF-1 40 445 IPR004403 GO:0003747|GO:0006415
Eupl06g00762 465 SUPERFAMILY L30e-like 306 448 IPR029064 -
Eupl06g00762 465 FunFam Eukaryotic peptide chain release factor subunit 1 30 163 - -
Eupl06g00762 465 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 34 168 IPR024049 -
Eupl06g00762 465 FunFam Peptide chain release factor subunit 1 307 465 - -
Eupl06g00762 465 SUPERFAMILY Translational machinery components 170 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00762 Eupl-Chr6 12366130 12368450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00762 29 465 Eukaryotic Initiation Factors Gene Family AT3G26618 91.991 0.0 829
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00762 K03265 - msin:131239554 839.336