Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00713 ATGATACCTCCAATGGAACTGCTCAGATCGAACCTCTCTCGGGTTCGAATTCCAGAGCCTACCAATCGAATTTACAAGCAAGAATGCTGCATTTCTTTTGATTCGACGAGATCTGAGGGTGGGTTGTTCATCGACATGAACTCGTTTCTTGCATTTGGGAAAGATTGTGTGGGTTGGAACTACGAGAAGACTGGAAATCCAGTTTATTTGCATATCACGCAGACGAGAAAGCCGGTTGCGGAAGATAGACCTCTCAAGAAACCGACACTTCTAGCAATCGGTGTTCATGGAGGATTTGACAACCATGAACCTGAGTACGAAGAAACTCACAACATCGTCATATTGCCTGAATTTGTTACTCTTCCATTTCCTTCTGTGGAGTTGCCAGAAAAGGTCAGGTTGGCAGTTGATGCTATTTTAATGGCCGAGGGTGCTGAGCGGAAAGAGCAAATAGCATCTTGGACAGCTGATAAGAAGCAAGTTAGTGCTTATGCCATGAATCTGGAACAGATTGGCAGTGGTGTTGTTGTGCCTCCTTCTGGGTGGAAATGCTGCAAGTGTGACAAGACTGATAATCTTTGGCTGAATCTAACTGATGGATTGATCCTTTGCGGGAGGAGAAACTGGGATGGAAGTGGCGGTAATAACCATGCGGTTGAACACTACAAAGAAATGAACTACCCTCTTGCTGTAAAGCTTGGAACTATAACTGCTGATTTGGAAGGAGCAGATGTATTCTCTTATCCGGAGGATGAAAGTGTTGAGGATCCGCTATTAGCTCAACATTTGGCATTTTTTGGCATTGATTTTTCATCATTGCAAAAGACTGAAATGACAACCGCTGAAAAGGAACTCGACCAGAATACCAATTTTGATTGGAACCGCATACAAGAAAGAGGACAGGAAGTTGAACCACTATTTGGACCAGGTTATACAGGACTCGTCAATCTTGGGAACAGTTGCTATTTGGCGTCAACTATGCAAGTAGTATTCTCAACTCATTTTTTCTGTTCACGATACTACAAGAACCAGAGTCTGAAACTGGCTTTTGAGACTGCTCCTGCTGATCCAACTTTAGATTTGAACACACAGTTGACAAAGCTGGGGCATGGTTTGCTGTCTGGTAAATATTCTATTCCTGCGCATGAGAAAGATGAAATTGCAAATTCTACGACGACAACTTCAAGCGCTAAACAGGAAGGGATACCCCCTCGCATGTTCAAGGCTGTTATTGCAGCTAGCCATCCTGAATTTTCTACTATGAGGCAGCAGGATGCCTTAGAGTTTTTCTTGCATCTTCTTGACCAAGTTGAACGAGCTAATCCTGGAAAATCTGAATTGGATCCTTCGAGGAGTTTCAAGTTCGGTATTGAAGAGCGACTTCTGTGTTCATCTGGAAAAGTTGCTTACAATAGAAGAGTTGATTACATCCTTTCTCTAAATATCCCACTGTATGAAGCCACTAATAAAGAACCGCTAGAAGCATTTCAGAAGTTGAAAGCAGAAAAGAGTTTGGAAGGAAAGGAAGTATCAGGAGATGAAATTGTTCGCCCAAGGGTGCCCCTAGAAGCATGCTTGGCTAGCTTTTCAGCTCCAGAGGAGGTACACGATTTTTACAGCACTGCCTTGAATGCTAAGACAACAGCAATCAAAACTGCTGGCTTGACTTCGTTCCCAGATTATCTAGTGTTGCACATGCGGAAATTTGTTATGGAGGAAGGCTGGGTGCCAAAAAAGCTCGATGTCTATATAGACGTGCCTGATATAATAGATATTAGTCACATGCGCAGCAAGGGTCTTCAGCCAGGGGAAGAGCTATTACCAGAGTCAGTTGCTGAGGGTGAGATGGTGGGATCAAGGAAGCCTTCAGCCGATGTGGGTATTGTTTCCCAGCTTGCTACTATGGGATTTAATTATCTTCACTGTCAGAAAGCTGCTATTAATACCTCAAATGCTGGACTAGAGGAGGCAATGAATTGGTTGCTCTCTCACATGGATGATCCAGATATAGACGATCCTATTTCCCAAGAGGTGCAAACTGCTGAAATGCTATTATCATCTGTTGACCAATCAAAAGTTGATACTTTGGTATCGTTTGGATTTCAAGAAGAGCTTGCTAGAAAGGCATTGAAGGCATCAGGTGAGGATATTGAGAAAGCAACGGATTGGATATTTAGCCACCCAGATGTTTCTAGTTCATCGGATATGGATGCTACAGCAAGCAGTGCACCGAGTGCTGTCGACGCAGAACTACCTGATGGATTAGGAAGGTACAAGCTTATTGGACTGGTAAGCCACATTGGTACCTCTACCCAATGTGGGCACTACGTGGCTCATGTTTATAAAGATGGGAGATGGGTGATCTTCAATGATGACAAGGTCGGAGCATCCATTAACCCCCCCAAGGACATGGGCTACTTATATTTCTTCTCGAGACTTAACAGTTAA 2448 0.4359 MIPPMELLRSNLSRVRIPEPTNRIYKQECCISFDSTRSEGGLFIDMNSFLAFGKDCVGWNYEKTGNPVYLHITQTRKPVAEDRPLKKPTLLAIGVHGGFDNHEPEYEETHNIVILPEFVTLPFPSVELPEKVRLAVDAILMAEGAERKEQIASWTADKKQVSAYAMNLEQIGSGVVVPPSGWKCCKCDKTDNLWLNLTDGLILCGRRNWDGSGGNNHAVEHYKEMNYPLAVKLGTITADLEGADVFSYPEDESVEDPLLAQHLAFFGIDFSSLQKTEMTTAEKELDQNTNFDWNRIQERGQEVEPLFGPGYTGLVNLGNSCYLASTMQVVFSTHFFCSRYYKNQSLKLAFETAPADPTLDLNTQLTKLGHGLLSGKYSIPAHEKDEIANSTTTTSSAKQEGIPPRMFKAVIAASHPEFSTMRQQDALEFFLHLLDQVERANPGKSELDPSRSFKFGIEERLLCSSGKVAYNRRVDYILSLNIPLYEATNKEPLEAFQKLKAEKSLEGKEVSGDEIVRPRVPLEACLASFSAPEEVHDFYSTALNAKTTAIKTAGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDIIDISHMRSKGLQPGEELLPESVAEGEMVGSRKPSADVGIVSQLATMGFNYLHCQKAAINTSNAGLEEAMNWLLSHMDDPDIDDPISQEVQTAEMLLSSVDQSKVDTLVSFGFQEELARKALKASGEDIEKATDWIFSHPDVSSSSDMDATASSAPSAVDAELPDGLGRYKLIGLVSHIGTSTQCGHYVAHVYKDGRWVIFNDDKVGASINPPKDMGYLYFFSRLNS* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00713 815 SUPERFAMILY RING/U-box 162 270 - -
Eupl06g00713 815 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 123 812 - -
Eupl06g00713 815 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 687 727 IPR015940 -
Eupl06g00713 815 Pfam Variant UBP zinc finger 15 78 IPR041432 -
Eupl06g00713 815 SMART uba_6 625 663 IPR015940 -
Eupl06g00713 815 SMART uba_6 689 726 IPR015940 -
Eupl06g00713 815 FunFam Ubiquitin carboxyl-terminal hydrolase 622 664 - -
Eupl06g00713 815 FunFam Ubiquitin carboxyl-terminal hydrolase 305 645 - -
Eupl06g00713 815 Pfam Zn-finger in ubiquitin-hydrolases and other protein 184 257 IPR001607 GO:0008270
Eupl06g00713 815 Gene3D - 677 733 - -
Eupl06g00713 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 257 IPR013083 -
Eupl06g00713 815 CDD Peptidase_C19B 313 810 - -
Eupl06g00713 815 SUPERFAMILY UBA-like 683 729 IPR009060 GO:0005515
Eupl06g00713 815 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 313 328 IPR018200 GO:0004843|GO:0006511
Eupl06g00713 815 SMART Zf_UBP_1 183 238 IPR001607 GO:0008270
Eupl06g00713 815 Gene3D Cysteine proteinases 305 620 - -
Eupl06g00713 815 FunFam Ubiquitin carboxyl-terminal hydrolase 665 732 - -
Eupl06g00713 815 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 103 IPR013083 -
Eupl06g00713 815 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 758 776 IPR018200 GO:0004843|GO:0006511
Eupl06g00713 815 ProSiteProfiles Zinc finger UBP-type profile. 160 270 IPR001607 GO:0008270
Eupl06g00713 815 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 312 813 IPR028889 -
Eupl06g00713 815 Gene3D - 621 676 - -
Eupl06g00713 815 PIRSF UBP 5 814 IPR016652 GO:0004843|GO:0016579
Eupl06g00713 815 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 623 664 IPR015940 -
Eupl06g00713 815 CDD UBA1_atUBP14 625 665 - -
Eupl06g00713 815 FunFam Ubiquitin carboxyl-terminal hydrolase 148 257 - -
Eupl06g00713 815 SUPERFAMILY Cysteine proteinases 308 813 IPR038765 -
Eupl06g00713 815 Pfam Ubiquitin carboxyl-terminal hydrolase 312 810 IPR001394 GO:0004843|GO:0016579
Eupl06g00713 815 CDD UBA2_atUBP14 691 728 - -
Eupl06g00713 815 FunFam Ubiquitin carboxyl-terminal hydrolase 5 102 - -
Eupl06g00713 815 Pfam UBA/TS-N domain 689 724 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00713 Eupl-Chr6 11457661 11483911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00713 622 672 C2H2 Transcription Factor Family AT1G04850 39.216 2.51e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00713 K11836 - nnu:104605724 1426.77