LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g00683	ATGGCAACTCAGTTTCCCGACGATTTCAAGTGCCCGATTTCGTTAGAGATAATGTCTGACCCAGTGGTCCTTCCGTCCGGACACACCTTCGACCGATCTTCGATCGAACGGTGGTTGGACTCCGGAAACCGGACCTGCCCAATCACTAAACTCCCACTCCCTCAACACCCGTCTCTCATCCCTAACCATGCACTCAGAAGCCTCATTTCCAACTTTACCCTTGGTTTTCCTCCTAAACCACAACCCAACCTAGAACCCCAAACCCTTATCTCCATTCTCACCTCTCCATCGTCTCCTCTTCAGTCCCAACTCGATTCGCTCAACCATCTCAACCGTCTCTCTAAACGGAACCCCAATTTTCGTCAAAGGTTAACGGAGTCCGGTGCTGTTTCCGCTGTTCTGAATTGTGTCGACTCTGACGATCCGATTCTACAAGAATCTGCGCTTACGCTTCTACTAAATCTCAGTTTGGATGATGACAACAAGGTGGGTTTAGTTGCGGAGGGCGCAATTGGGCGTGTCGTTGCAGCGTTGCGAGGCGGGACTCCGAATTGCCGGGCGTATGCAGCGACTATGCTGACGAGTTTGGCTATGGTAGAAGTGAATAAGGGAACAATCGGTGCATACCCATTTGCTATTAGAACGCTGGTTTGGCTCCTTCGGAACGGGAAAGGGCGGGAAAAGAAAGAAGCGGCGACGGCGCTTTACGTACTCTGTTCGTTCCCGGATAATAAGAAGAGAGCGTTGGAATGTGGGGCGGTGCCAATTTTGATCGAAATGGCCGATTCTGGGATTGAGAGGGCGGTCGAGGTGTTGGGTCTGTTGGCCAAATGCAGGGAAGGGAGAGAAGAGATGGGAAGGTTTGATGGGTGTGTCGATATTTTGGTTCGGGTATTACGGGATGGGAGTTCGCGGAGCGTGGTACATGGACTCTCCGCGTTGAATTCACTCTGTTCTCATAACGAAGAGATTGGTTTGGAGGTGAGGAGACAAGGGGTTGTAGAGATTTGTTTGGGACTGGTGGAAGACGAGAACGAAAAAATTAGTAGAAATGCTTCGACTTTAATTCAATCTCTGCGGAGGAACCGGTTGAGGGGTTGA	1101	0.5059	MATQFPDDFKCPISLEIMSDPVVLPSGHTFDRSSIERWLDSGNRTCPITKLPLPQHPSLIPNHALRSLISNFTLGFPPKPQPNLEPQTLISILTSPSSPLQSQLDSLNHLNRLSKRNPNFRQRLTESGAVSAVLNCVDSDDPILQESALTLLLNLSLDDDNKVGLVAEGAIGRVVAALRGGTPNCRAYAATMLTSLAMVEVNKGTIGAYPFAIRTLVWLLRNGKGREKKEAATALYVLCSFPDNKKRALECGAVPILIEMADSGIERAVEVLGLLAKCREGREEMGRFDGCVDILVRVLRDGSSRSVVHGLSALNSLCSHNEEIGLEVRRQGVVEICLGLVEDENEKISRNASTLIQSLRRNRLRG*	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g00683	366	PANTHER	U BOX DOMAIN-CONTAINING	6	358	-	-
	Eupl06g00683	366	SUPERFAMILY	RING/U-box	3	73	-	-
	Eupl06g00683	366	FunFam	RING-type E3 ubiquitin transferase	4	75	-	-
	Eupl06g00683	366	CDD	RING-Ubox_PUB	6	53	IPR045210	-
	Eupl06g00683	366	SUPERFAMILY	ARM repeat	87	359	IPR016024	-
	Eupl06g00683	366	SMART	Ubox_2	8	72	IPR003613	GO:0004842\|GO:0016567
	Eupl06g00683	366	Gene3D	-	206	363	IPR011989	-
	Eupl06g00683	366	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	74	IPR013083	-
	Eupl06g00683	366	Pfam	U-box domain	6	73	IPR003613	GO:0004842\|GO:0016567
	Eupl06g00683	366	SMART	arm_5	158	198	IPR000225	GO:0005515
	Eupl06g00683	366	SMART	arm_5	241	277	IPR000225	GO:0005515
	Eupl06g00683	366	SMART	arm_5	321	361	IPR000225	GO:0005515
	Eupl06g00683	366	SMART	arm_5	278	319	IPR000225	GO:0005515
	Eupl06g00683	366	SMART	arm_5	117	157	IPR000225	GO:0005515
	Eupl06g00683	366	Gene3D	-	81	205	IPR011989	-
	Eupl06g00683	366	ProSiteProfiles	U-box domain profile.	4	79	IPR003613	GO:0004842\|GO:0016567

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g00683	Eupl-Chr6	10347677	10349391	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g00683	1	359	U-box Gene Family	AT4G21350	61.580	4.15e-151	429

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g00683	-		-	nnu:104585720	531.176