Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00680 ATGGCAGATGAGTTTCAGACTGGGATTTGCAGTGGAAGCTGGTGGAATTCTACGAGGAACGGATTAAACGGAGGATCATCACCGTGCTCGACGGCTCTTAGTGATATCGGAAGCTTTGGATGGTCTACTGATATGGTGGAGATGAAAGCGAGGTCGTCCTGCGAGGAGTCGGCTTCCGTTTCTGATAGCTCGATTGTTTTCCAAGATGCCCAGAAACCCCAAGGATCGGATTCTGTTGGTGGTGGTGGCGGCAGTATTTTGATGGATTCAACCTTACAAATGATGGGTTTCAGCCTTTCATCTCCCACCATGGATTGGAGCCAAGCTTTACTCAGTCGAAGTAGTGGAAGAGCTGAGAGCAATTTTCATTCCATGCTTCAAGAAGACTTGAGCTCGAGGCAGAACTTTCGGCAAGAAAGTGGGATGGAATCTGGTCAAGTACTCCACAAGAACTGGAGTCCGAAGAATTTCTCTGGTGGTTCTGAAGATTCGACCTTAAATATGTTTAAACAAATAAATCAGGGTTTCAGTTTAGACCAACATCGTTTAAATTCAGGAAACAGCTCCGGCGACTGTACAAGCTTTTCCATGAGTTCAGCTTCTTACGGTCTATTCGAACCTGATCTTCAACCCCAACAAATGATTTATCAATCTCCAGCAAATTACCGCATGAACGCAAACGAATTGTCACCTTCTTGGACAAAATTCCCTCAGTTTCCTAAAACTTCACCTCCAAAACAGCAACCTACTAACCAATTGCACTTCTCTAACAACGCTCCTTTCTGGAACGCCTCTGCAACTGCCATGAATGATGTTCGTTCAAGCTTTTTCCCTTCGCCTCAAACCCAATTTCTCACACCGAAATTTGAAGAGAAACCCCACTGCAGTAACCTCACCGTGAAGCCTAAGACAGAAGATGTCAGTGACTCCGGCTCAGTGGTGAAGAAAAGCAGCACTGAACCCGCATTCAAAAGGCCAAGAATTGAAACGCCATCACCATTACCAACTTTTAAGGTCCGGAAAGAGAAGCTAGGAGACCGAATCACTGCTCTCCAACAATTGGTTTCTCCTTTCGGAAAGACAGATACGGCATCAGTTCTCTTTGAAGCTATTGAGTACATCAAGTTCCTCCATGAACAAGTCAGTGTTTTAAGTACCCCATATATGAAAAATGTAGCTCCCATACAACACCAGCAGAATTCTGATATATCGAAGGAGGTTGAAGGACCCAAACAAGATCTTAGAAGCCGTGGGCTGTGTTTGGTGCCGGTTTCGAGCACCTTCCCAGTTACTAACGAGACTGCCGCAGATTTTTGGACGCCTACGTTTGGAGGAACTTACAGGTAG 1347 0.4543 MADEFQTGICSGSWWNSTRNGLNGGSSPCSTALSDIGSFGWSTDMVEMKARSSCEESASVSDSSIVFQDAQKPQGSDSVGGGGGSILMDSTLQMMGFSLSSPTMDWSQALLSRSSGRAESNFHSMLQEDLSSRQNFRQESGMESGQVLHKNWSPKNFSGGSEDSTLNMFKQINQGFSLDQHRLNSGNSSGDCTSFSMSSASYGLFEPDLQPQQMIYQSPANYRMNANELSPSWTKFPQFPKTSPPKQQPTNQLHFSNNAPFWNASATAMNDVRSSFFPSPQTQFLTPKFEEKPHCSNLTVKPKTEDVSDSGSVVKKSSTEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLFEAIEYIKFLHEQVSVLSTPYMKNVAPIQHQQNSDISKEVEGPKQDLRSRGLCLVPVSSTFPVTNETAADFWTPTFGGTYR* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00680 448 CDD bHLH_AtbHLH_like 334 385 IPR045239 -
Eupl06g00680 448 Gene3D - 338 402 IPR036638 GO:0046983
Eupl06g00680 448 MobiDBLite consensus disorder prediction 300 334 - -
Eupl06g00680 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 390 IPR036638 GO:0046983
Eupl06g00680 448 MobiDBLite consensus disorder prediction 301 317 - -
Eupl06g00680 448 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 143 429 - -
Eupl06g00680 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Eupl06g00680 448 FunFam Transcription factor bHLH123 family 338 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00680 Eupl-Chr6 10312824 10316326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00680 1 445 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.043 7.91e-72 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00680 - - msin:131237334 631.328