Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00663 ATGGCGATGAGAGCGGCAGCACCCCGTGGGCTAAGCAGACGGCTATTCTCTAGTTTTGCTTTCGCTCCTCCGCCGACACCTGCATCAGCTACAGCTCCTCAACCAGCTGAACCCTCTACCAACCTCTTTGTCTCAGGGCTTAACAAACGTACTACGTCAGAGGGACTTAAAGAAGCCTTTTTGAAATTTGGTGAAGTCATCAATGCTCGGGTTGTGACCGACCGCACTTCGGGATATTCCAAGGGCTTCGGTTTTGTAAGATATGCCACTTTAGATGAGGCTGCAGAAGGTATAAAGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATTTTCGCAGAGTATGCAAGACCAAGAACACCACAGCCACCTCCTGAGAATACTGGGGCTTTTCCATCATCGCCAAGATATTAA 414 0.4903 MAMRAAAPRGLSRRLFSSFAFAPPPTPASATAPQPAEPSTNLFVSGLNKRTTSEGLKEAFLKFGEVINARVVTDRTSGYSKGFGFVRYATLDEAAEGIKGMDGKFLDGWVIFAEYARPRTPQPPPENTGAFPSSPRY* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00663 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Eupl06g00663 137 Gene3D - 17 126 IPR012677 -
Eupl06g00663 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 108 IPR000504 GO:0003723
Eupl06g00663 137 PANTHER NUCLEOLAR PROTEIN 8 25 125 - -
Eupl06g00663 137 MobiDBLite consensus disorder prediction 117 137 - -
Eupl06g00663 137 FunFam RNA recognition motif-containing protein 19 130 - -
Eupl06g00663 137 SMART rrm1_1 41 114 IPR000504 GO:0003723
Eupl06g00663 137 SUPERFAMILY RNA-binding domain, RBD 22 128 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00663 Eupl-Chr6 10054364 10061422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00663 41 117 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 1.23e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00663 - - nnu:104604956 194.512