Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00588 ATGGCTGACTTGGATCACTCTTCTGAAGATACTTCTGTCGATTCTCGAGAGGAAACCAGTCAAGACTCTAAGCTGGAATTTTCAGAAGATGAAGAAACACTTATTACTAAGATGTATAATCTGGTTGGAGAAAGGTGGACTCTAATTGCTGGGAGAATCCCTGGAAGAACGGCAGAAGAGATAGAGAAGTACTGGACTTCAAGATATTCAACAAGTGAATGA 222 0.4054 MADLDHSSEDTSVDSREETSQDSKLEFSEDEETLITKMYNLVGERWTLIAGRIPGRTAEEIEKYWTSRYSTSE* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00588 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 73 IPR017930 -
Eupl06g00588 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 26 70 - -
Eupl06g00588 73 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Eupl06g00588 73 CDD SANT 26 65 IPR001005 -
Eupl06g00588 73 SUPERFAMILY Homeodomain-like 26 69 IPR009057 -
Eupl06g00588 73 Gene3D - 26 68 - -
Eupl06g00588 73 FunFam MYB-like transcription factor 26 68 - -
Eupl06g00588 73 MobiDBLite consensus disorder prediction 1 29 - -
Eupl06g00588 73 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
Eupl06g00588 73 SMART sant 23 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00588 Eupl-Chr6 8528784 8530368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00588 26 67 MYB Transcription Factor Family AT4G09460 50.000 7.20e-13 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl06g00588 Myb_DNA-binding 7.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00588 - - pop:18106978 136.732