Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl06g00584 | ATGAACGACCTGCTCACGGATTCATTTGTAAATGGAGGCAGAGATCAGCCTCCAAGAGAGAGGGATATTGAGATGGGAACCCAGGTTCCGTCGAATAACTCGGATTTGGGAATGGAAGCTTTCTTTAAGCAGGTACGAGAGCTTGAGAAACAGATGGACAAGCTTGCTAAGCTACTTCAGAAACTTCAGGAAGCTAATGAGGAGACCAAGTCTGTTACAAAAGCCTCTGCTATGAAAGCAATCAAACAGCGAATGGAGAAAGATATTGATGAAGTGGGAAAGATCGCACGTAACCTCAAAGCAAAACTACAAGAGATAGACAAAGATAACTTAGTTAACCGACAGAAGCCTGGTTGTGGAAAAGGAACAGGTGTTGACCGATCCAGGATGGCTATGACTACTGCCTTGAAGAAAAAGTTGAAAGAGCGTATGGATGACTTTCAGATTCTCAGGCAAAATATCCAAGATGAGTATCGTGAGGTTGTCGAGAGAAGGGTCTTTACAGTTACGGGAACCAGACCAGATGACGAGACAATTGACCACCTGATAGAGACTGGAAACAGCGAACAAATCTTCCACAAGGCAATACAGGAAATGGGAAGAGGACAGGTGCTGGATACTCTGGAAGAAATTCAGGAGAGACACGATGCTGTGAAGGAAATTGAAAAGAAGCTTCTCGACTTGCATCAGGTTTTCCTTGATATGGCGGTTCTAGTTGAAGCCCAAGGAGACATGTTAGACAACATCGAAACTCAGGTCTCAAATGCAGTCGACCATGTTCAGTCTGGCACGACTGCACTTCAGAATGCAAAGAGGTTGCAGAAGAACTCCCGAAAATGGATGTGCATTGCCATTATTATTCTTCTAATAATAGTAGCCGTAATTGTCGTCGGTGTAATCCAACCTTGGAAGAGTGGCAAGGGTGCTTAA | 930 | 0.4419 | MNDLLTDSFVNGGRDQPPRERDIEMGTQVPSNNSDLGMEAFFKQVRELEKQMDKLAKLLQKLQEANEETKSVTKASAMKAIKQRMEKDIDEVGKIARNLKAKLQEIDKDNLVNRQKPGCGKGTGVDRSRMAMTTALKKKLKERMDDFQILRQNIQDEYREVVERRVFTVTGTRPDDETIDHLIETGNSEQIFHKAIQEMGRGQVLDTLEEIQERHDAVKEIEKKLLDLHQVFLDMAVLVEAQGDMLDNIETQVSNAVDHVQSGTTALQNAKRLQKNSRKWMCIAIIILLIIVAVIVVGVIQPWKSGKGA* | 310 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl06g00584 | 309 | SMART | SynN_4 | 33 | 159 | IPR006011 | GO:0016020 | |
| Eupl06g00584 | 309 | Coils | Coil | 137 | 157 | - | - | |
| Eupl06g00584 | 309 | FunFam | Syntaxin 132 | 33 | 162 | - | - | |
| Eupl06g00584 | 309 | SUPERFAMILY | t-snare proteins | 36 | 263 | IPR010989 | GO:0016020|GO:0016192 | |
| Eupl06g00584 | 309 | ProSitePatterns | Syntaxin / epimorphin family signature. | 214 | 253 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Eupl06g00584 | 309 | PANTHER | SYNTAXIN | 38 | 288 | IPR045242 | - | |
| Eupl06g00584 | 309 | Pfam | SNARE domain | 244 | 296 | IPR000727 | - | |
| Eupl06g00584 | 309 | Gene3D | - | 199 | 301 | - | - | |
| Eupl06g00584 | 309 | Coils | Coil | 82 | 102 | - | - | |
| Eupl06g00584 | 309 | FunFam | Syntaxin 132 | 201 | 301 | - | - | |
| Eupl06g00584 | 309 | Pfam | Syntaxin | 41 | 243 | IPR006011 | GO:0016020 | |
| Eupl06g00584 | 309 | CDD | SynN | 38 | 195 | IPR006011 | GO:0016020 | |
| Eupl06g00584 | 309 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 208 | 270 | IPR000727 | - | |
| Eupl06g00584 | 309 | Coils | Coil | 38 | 75 | - | - | |
| Eupl06g00584 | 309 | Gene3D | - | 33 | 162 | - | - | |
| Eupl06g00584 | 309 | SMART | tSNARE_6 | 203 | 270 | IPR000727 | - | |
| Eupl06g00584 | 309 | CDD | SNARE_syntaxin1-like | 207 | 268 | - | - | |
| Eupl06g00584 | 309 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl06g00584 | Eupl-Chr6 | 8472559 | 8479096 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl06g00584 | 1 | 309 | SNARE and Associated Proteins | AT3G03800 | 66.019 | 6.90e-138 | 390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl06g00584 | K08486 | - | atr:18421562 | 466.077 |