Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00580 ATGGCTGCACTCCGTCAACCCTTAATAGACTCTCCCAAGAGAACAACTTCCTCTTTCAAGTCGATCCTCTACGTTCTTCTCTCTTTAGCTGCTACCATCTGCCTAACTGCTCCAGTTGCTCTTCCTCTCATCAATACCAACAAGTACTCTGATATCTCTGTGCCTCCCCACATATGTAATCGAGCCCACCATCCGGCATCATGCCTTGCCATGGTCTCCGAAGCAGTTGCCGATCAAGAGATGCAATTGAGTGAGGTTGATATCCTCCAGGTCTTCCTAAAGAAGTATGTATCATATATAGGATTTGCTATTGAGGTGGCCGATTATGTCACCAGTCGGATCAACGATTTTAAACAGCAAGCAGCTTTGGCTGATTGTATGGAGCTGTTGGATTTCTCAATAGACGGCGTGAAGGATTCCATATCGGCGATTGGCAATCAGACGGCTCGATTGCATGCCGACGCACATGCGTGGCTCAGTGCTGTACTTACCAATCATGTCACCTGCTTGGATGGTCTCCATGGGTCGGCCCGATCGGCAATGGAAGCTGATCTTGAAATCTTGATAGACGTGGCTAGAATTTCATTGGCAATGCTAACTGCAACTTCCCCTTCTAATGTAGAAAAAAACTGGCTTCTGAACCGGGATTTCCCCTTCTGGGTCACTTATAGGGACAGGAAACTTCTAGAAGATTTGCCTAAGGACATCAAAGCTGATGTTGTGGTGGCGAAAGACGGAAGCGGGAAGTACAAGACGGTGCAAGAGGCGGTTGAATCGGCACCCGATAATGGAAATATCCGGTACGTGATCCATGTGAAAAAGGGAACGTACAAGGAGAATGTGGAGTTGGGGAAGAAGAAGAAGAACGTGATGCTCGTAGGCGATGGCATGGATTCGACCATCATCACCGGAAGCCTCAATTTCGTCGATGGATCAACAACTTTCAAATCTGCGACTGTCGCTGCCGTGGGTGACGGATTCATAGCCCAAGACATCTGGTTTCAGAACACGGCTGGACCGGAGAAGCATCAAGCGGTTGCTCTACGCGTAGGAGCTGATCGATCCGTCATAAACCGCTGCCGCATTGATGCTTACCAGGACACACTTTACACGCACTCCCTCCGCCAATTCTACAGAAACTGCTCTGTCACCGGCACTGTAGATTTCATCTTTGGTAACGCAGCGGTGGTGATCCAAAACTCCAAAATCATAGCCCGAAAACCAATGATCGGCCAAAAGAATATGATAACAGCCCAAGGTCGGATCGACCCAAACCAGAACACGGGTACTTCAATCCAGAATTGTGAGATAATAGCCAGTTCTGACTTGGCACCAGTGAAGAGCTCATTTCCAACATATCTTGGTCGTCCGTGGCAAGAATACTGTAGAACTGTCGTCATGCAGTCATACATTGGAGATCATATTGATCCAGAAGGGTGGTCAGAATGGAGTGGGGATTTTGCATTGAAGACATTGTATTATGGAGAGTACTCAAATAGAGGACCGGGTGCAGGTACGAGCAAGCGAGTAAAATGGCCTGGTTATCGAGTCATCACCGACCCAGTGGAAGTGAAGAAGTTCACGGTGGCGGAGCTGATTCAAGGAGGGGTCTGGTTGAAGTCTACAGGAGTCGCATATACTAAAGGACTGTGA 1653 0.4815 MAALRQPLIDSPKRTTSSFKSILYVLLSLAATICLTAPVALPLINTNKYSDISVPPHICNRAHHPASCLAMVSEAVADQEMQLSEVDILQVFLKKYVSYIGFAIEVADYVTSRINDFKQQAALADCMELLDFSIDGVKDSISAIGNQTARLHADAHAWLSAVLTNHVTCLDGLHGSARSAMEADLEILIDVARISLAMLTATSPSNVEKNWLLNRDFPFWVTYRDRKLLEDLPKDIKADVVVAKDGSGKYKTVQEAVESAPDNGNIRYVIHVKKGTYKENVELGKKKKNVMLVGDGMDSTIITGSLNFVDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADRSVINRCRIDAYQDTLYTHSLRQFYRNCSVTGTVDFIFGNAAVVIQNSKIIARKPMIGQKNMITAQGRIDPNQNTGTSIQNCEIIASSDLAPVKSSFPTYLGRPWQEYCRTVVMQSYIGDHIDPEGWSEWSGDFALKTLYYGEYSNRGPGAGTSKRVKWPGYRVITDPVEVKKFTVAELIQGGVWLKSTGVAYTKGL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00580 550 Gene3D - 233 550 IPR012334 -
Eupl06g00580 550 SMART PMEI_2 50 198 IPR006501 GO:0004857
Eupl06g00580 550 SUPERFAMILY Pectin lyase-like 237 548 IPR011050 -
Eupl06g00580 550 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Eupl06g00580 550 Pfam Pectinesterase 239 535 IPR000070 GO:0030599|GO:0042545
Eupl06g00580 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 202 IPR035513 -
Eupl06g00580 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 200 IPR035513 -
Eupl06g00580 550 CDD PMEI-like_4 65 201 - -
Eupl06g00580 550 PANTHER PECTINESTERASE 32 540 - -
Eupl06g00580 550 FunFam Pectinesterase 233 550 - -
Eupl06g00580 550 Pfam Plant invertase/pectin methylesterase inhibitor 58 198 IPR006501 GO:0004857
Eupl06g00580 550 NCBIfam pectinesterase inhibitor domain 26 198 IPR006501 GO:0004857
Eupl06g00580 550 ProSitePatterns Pectinesterase signature 1. 264 283 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00580 Eupl-Chr6 8413061 8416151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00580 1 550 Carbohydrate Esterase AT1G11580 54.821 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00580 K01051 - nnu:104604877 758.829