Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00572 ATGGAAGAAGAGAGGTTCGTCCCCTCCAGAGAAAACCCTAGAAATCTAGTATTTCTACCAGAGCGTGGTGGTCCTAGCATCGGTGGCACCAGCAACAACAACAAGGCCATGCCCGCGGAGTTGATTCAGAAGCCTCCTCCACCTATTCTCGATCGATTTAGGGCTCTATTGAAGGAAAGAGAAGAGGAGTTGACGGTTTCAGAGGATGACGAGGTTACGGCGCCGAGCAACGAAGAGATTGTTCGGCTTTACGAAATTGTTTTATCGGAACTTACTTACAATTCAAAGCCTATTATTACAGAGCTTACAATCATCGCTGGAGAGCAGAGAGAGTACGGGGAAGGAATTGCCGATGCAATTTGCGCCAGAATTATCGAGGTCCCAGTTGAGCAGAAGATGCCTTCTTTATATCTTCTGGACAGTATAGTAAAGAACATTGGCCGTGAATATGTGAGGTGCTTCGCTTTCCGCCTCCCTGAGGTGTTTTGCGAGGCATACAGGCAAGTTCACCCTAACATGTATCCTGCCATGCGCCACCTCTTCAGGACCTGGTCAGCAGTATTCCCACCTTCGGTACTTCACAAGATTGAGGTCGAACTTCAATTTTCTCCACCTGTGAACCATCAGTTATCTGGCTTGACAGCATTGAGATCTGAATCTCCATCTCCTCGTCCAGCTCATGGTATACACATCAATCCAAAATACTTGGAGGCAAGGCGTCAATTTGAACATTCAAGTGCGGCAAATATGCGTGAAACAATCCTAACAAGATTGCTGTACATATTACAGTTTTTGGAGTGGAAAGAATGGAGAGATGCTTTTGCAAGTCCCGAAGGATTGGTTGTAGCTTCTCCAACATTCCATGATGCTCAACATGACAGAGGAATTTCTTCAAGCCTGCAGATATATGGACAAAAACCTGCCGTTGGATATGGCGAGTATGATATCGATCATGCCGAGGTTATCTCCCCACAGGTTGGAGCACAACGATCAGGCTTGCCTGGAATTGAGGCCCATAAATCTTCTATAGTTGGAGCTGAAAGGCCACTCCCTACTTCGAAAACTAGGCTTGTAAGCTCCTCCTCTCCTTCGAGAATCAGGCCAGCTAGGTCTTTATCACCGTCCGGTGATGGATTGGCAATGGAAAATTCTCCTGGAAGGGTTGTTGGAAGGGCCTCTTCATCTCATTCTGGATTTGAATATGGAGTTGGCAGAGTGAGTGAGAGGGACAGGGAGACGAATGATTGGTGGATGAAACATTGGTCCGACGGTGGCCGTCAGCACATAGAAACTTCTAGTGCATACAATCTCAGCAATGGATGTGATCAGCAAGGGCCAAGAGCTTTAATTGATGCTTATGGACATTACAGAAGTAAAAGCACTCTGAACGAGAAACCTCTGAAACTTGAATGGATTGATGTGAATGGCATGAATGGTAAGGCGACTATGGGAAGATGGCAGAATTCTGAAGAAGAAGAGTACGTTTGGGAAGATATGAGTCCAACTTTAGCAGATCGTAGTAGGAGTACTGATCTTATGCCTTCCAATCCCTCTCTTGGGAGCTTAAGCACAAGAACTGGTTTAAGAAGACCAAATGCGGCACTTTTGGAGCCTGATTTCAGAAGGGACAATTGGCCCAGGCAGGCTCAGCCATCTGTGGTGGATGATTCTGCTTTTATCGCTGAAGACGGGGTCTCAATCCTGGGTCCTGGCCGTGGAACTATGAGTGGTCCAGGAACTCGAAGGGACGCAACTCAGATTCATGGTTCTCACTATTCTCAAGAGCCCTGGAATCTTCCGCACTACTTCCCCCAGTCTTCGAAACACCTTAACCCTAAAGCAAGTGGAAGGGCTGTTAAGATGTCTATTCCATCATCAGGAATAGCTCCATCCGTTGGTCAAAAAGTGCCTTCTCTGGTTGATAATGTTCCAGATACTGAAGCACAATTCCAGAGGCTCCCAAGCGTTATGTCAAGAATGGGATCTTCAGGCACTGAACCTCTAAAAGTGGAGGTTCTGTCACCCTTGACACCAGCGTCAACAGTAGAGACGCATTTGGTTCAAAGGCCTCATTCACCTCCCATGCAACAACTGTTATGGCCTCCTTTGAATGTGCGTAAATCTCATCCGCTGCCTTTGCTCCCAACTTTTCCACGCCAGCAGTTAGATGCTCTTGAAAGGAAAGCCCTAAGTTCAAGTACGGTGCTGCAGTTGCCTAATCAGCAGGCAGGGTTGATTTCTTTGAATCAGCGAAACCAGGGACTAGCTGCTCGTTTACGGCCACAACAGCTCCAACCTCAGGAGGCTCAAGAGCGTGTTATTCCTTCCATCCCAGCTCAGGTCTCATCACATTTAATGGCACAAACCTGGAATCATGGACATACCCAACAAGGGCATGGTGCTGTAATGAGTACAATTTCATTGAATAAAATACCTGGGATACCACATTCTTCTGTGACAATCCACAGTATGCCAAATACCTCCTTCCATTTACAAGGGGGAGCCCTACCTCCTCTACCTCCTGGCCCCCCTCCTGGCTCATCACAGATGAGACCCACATCTCAAATAATGGGTCCCATTGCGTCTCACCCACCAGCCAGTGGTGCGTTTTCAGGTCTGATTAGTTCTCTTATGGCTCAAGGTGTGATCTCATTGACGACACCAGGCTCAGTTGAGGATTCCGTAGGAGTTGAATTTAATCCAGATCTTCTTAAGGTACGGCATGAGTCTGCAATAAATGCTCTATATAACAATCTTCCAAGACAGTGCACAACATGTGGCCTACGTTTCAACTGTCAAGAGGAGCACCGTAATCACATGGATTGGCATGTGACAAAAAATCGGATATCTAAAAACCGTAAGCAGACGTCCTCTCGCAAGTGGTTTGTAAGTACCAGTGTATGGCTTAGTGGTACAGAAACATTGGGATCTGATGCAGTTCCTGGGTTTTTGCCCACTGAAGCCATTGTAGAAAATAAGGATGATGAAGAAATGGCTGTTCCTGCTGATGAGAATCAGAATGTATGTGCGCTGTGTGGAGAACCTTTTGATGATTTTTATAGTGATGAGACTGAGGAGTGGATGTATAGAGGGGCGGTGTATATGAATGCTCCCGATGGATCAACAGTGGGCATGGATAGGTCTCAGTTGGGTCCTATTGTGCATGTTAAGTGCAGGTCTGAGTCTACAGTAATTTCCTCTGAAGATTTTGTACTAGATGAAGGGGGAAATACTGAAGAGGGTAGTCAAAGAAAAAAGATGCGGATTTAG 3270 0.4645 MEEERFVPSRENPRNLVFLPERGGPSIGGTSNNNKAMPAELIQKPPPPILDRFRALLKEREEELTVSEDDEVTAPSNEEIVRLYEIVLSELTYNSKPIITELTIIAGEQREYGEGIADAICARIIEVPVEQKMPSLYLLDSIVKNIGREYVRCFAFRLPEVFCEAYRQVHPNMYPAMRHLFRTWSAVFPPSVLHKIEVELQFSPPVNHQLSGLTALRSESPSPRPAHGIHINPKYLEARRQFEHSSAANMRETILTRLLYILQFLEWKEWRDAFASPEGLVVASPTFHDAQHDRGISSSLQIYGQKPAVGYGEYDIDHAEVISPQVGAQRSGLPGIEAHKSSIVGAERPLPTSKTRLVSSSSPSRIRPARSLSPSGDGLAMENSPGRVVGRASSSHSGFEYGVGRVSERDRETNDWWMKHWSDGGRQHIETSSAYNLSNGCDQQGPRALIDAYGHYRSKSTLNEKPLKLEWIDVNGMNGKATMGRWQNSEEEEYVWEDMSPTLADRSRSTDLMPSNPSLGSLSTRTGLRRPNAALLEPDFRRDNWPRQAQPSVVDDSAFIAEDGVSILGPGRGTMSGPGTRRDATQIHGSHYSQEPWNLPHYFPQSSKHLNPKASGRAVKMSIPSSGIAPSVGQKVPSLVDNVPDTEAQFQRLPSVMSRMGSSGTEPLKVEVLSPLTPASTVETHLVQRPHSPPMQQLLWPPLNVRKSHPLPLLPTFPRQQLDALERKALSSSTVLQLPNQQAGLISLNQRNQGLAARLRPQQLQPQEAQERVIPSIPAQVSSHLMAQTWNHGHTQQGHGAVMSTISLNKIPGIPHSSVTIHSMPNTSFHLQGGALPPLPPGPPPGSSQMRPTSQIMGPIASHPPASGAFSGLISSLMAQGVISLTTPGSVEDSVGVEFNPDLLKVRHESAINALYNNLPRQCTTCGLRFNCQEEHRNHMDWHVTKNRISKNRKQTSSRKWFVSTSVWLSGTETLGSDAVPGFLPTEAIVENKDDEEMAVPADENQNVCALCGEPFDDFYSDETEEWMYRGAVYMNAPDGSTVGMDRSQLGPIVHVKCRSESTVISSEDFVLDEGGNTEEGSQRKKMRI* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00572 1089 Pfam CID domain 90 195 IPR006569 -
Eupl06g00572 1089 ProSitePatterns Zinc finger C2H2 type domain signature. 923 943 IPR013087 -
Eupl06g00572 1089 SMART 558neu5 79 201 IPR006569 -
Eupl06g00572 1089 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Eupl06g00572 1089 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 45 1072 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Eupl06g00572 1089 Gene3D - 71 201 IPR008942 -
Eupl06g00572 1089 MobiDBLite consensus disorder prediction 1 44 - -
Eupl06g00572 1089 SUPERFAMILY ENTH/VHS domain 75 204 IPR008942 -
Eupl06g00572 1089 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Eupl06g00572 1089 MobiDBLite consensus disorder prediction 506 525 - -
Eupl06g00572 1089 CDD CID_Pcf11 81 197 IPR047415 -
Eupl06g00572 1089 MobiDBLite consensus disorder prediction 353 369 - -
Eupl06g00572 1089 MobiDBLite consensus disorder prediction 352 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00572 Eupl-Chr6 8221370 8245063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00572 30 652 C2H2 Transcription Factor Family AT4G04885 38.019 2.19e-100 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00572 K14400 - nnu:104610875 1345.1