Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00566 ATGTATGAAATGTGTGCACAGATGGGTGTAAGAAAAGGTGCATGGACTGAAGAAGAAGATTTACTACTTAGGAAATGCGTTGAGAAGTATGGAGAAGGGAATTGGCATCGAGTACCTCAAAGGGCAGGCCTGAATCGGTGTCGTAAGAGCTGTAGGCTGAGATGGCTGAACTATCTCCATCCAAACATCAAGCGAGGAGGATTTACGACGGACGAAATCGACCTCATCTTCCGGCTACATAAGCTCTTGGGCAATAGATGGACGTTGATCGCAGGTAGACTTCCTAATCGGACGGCCAATGATGTAAAGAACTACTGGAACTCCCACTTAAAAAAGAAGTTAGAAGCAGATGACAAGGAAATGAAACCCAAACCTGAAATGGTTAAAGTCATAAGGCCACAAGTACGGACTTTAATGCCCAGATCAATTCAATTTGGTTGTCTACAAGCTTCAAGAAGGCAACTACAACAGCAAGAGGAACATTATTGCATGCCAAAGCCCTTAGACGAGCATACCACGTCGTCGAACAATCTAATTCTTCAAGATGAAGAGATGAACCAGAGGTTATGCCTCGTCGATATGGAGGAAGGTTTGTCGACATCAAATTCTAAAATGGAAGATATTGAGGCCCTGGGAGAAAGCAGTAATTTTTTGGACGGTCTAGGCCAGTGGGATGATCTTATGGACATGAACATTTGGAGTTCGGAATGA 711 0.4374 MYEMCAQMGVRKGAWTEEEDLLLRKCVEKYGEGNWHRVPQRAGLNRCRKSCRLRWLNYLHPNIKRGGFTTDEIDLIFRLHKLLGNRWTLIAGRLPNRTANDVKNYWNSHLKKKLEADDKEMKPKPEMVKVIRPQVRTLMPRSIQFGCLQASRRQLQQQEEHYCMPKPLDEHTTSSNNLILQDEEMNQRLCLVDMEEGLSTSNSKMEDIEALGESSNFLDGLGQWDDLMDMNIWSSE* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00566 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 177 - -
Eupl06g00566 236 SMART sant 11 61 IPR001005 -
Eupl06g00566 236 SMART sant 64 112 IPR001005 -
Eupl06g00566 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Eupl06g00566 236 FunFam Myb transcription factor 12 64 - -
Eupl06g00566 236 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Eupl06g00566 236 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Eupl06g00566 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 114 IPR017930 -
Eupl06g00566 236 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Eupl06g00566 236 CDD SANT 14 59 IPR001005 -
Eupl06g00566 236 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Eupl06g00566 236 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Eupl06g00566 236 CDD SANT 68 110 IPR001005 -
Eupl06g00566 236 Gene3D - 12 64 - -
Eupl06g00566 236 Gene3D - 67 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00566 Eupl-Chr6 8181565 8183084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00566 9 113 MYB Transcription Factor Family AT1G66370 78.095 1.48e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl06g00566 Myb_DNA-binding 5.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00566 - K09422 msin:131220562 229.95