Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00544 ATGGAGCTCTGCCTGGTGATCGGGTCTGGCGGTTTATTCGTGGCGAGACTACTTCTGCTGTTGCTTTTATGTTTGTTGGCTCCCACAGAAGTCAAGGGTCAGGTTAGAAATGCTAGCTCTCCATCATCTAGGCCAAGTGTTTTGAATGTGGGAGCTCTGTTTACTTTCAATTCGACCATCGGAAGAGTGGCAAAACCAGCAATTGCAGCAGCAGTTGATGATGTGAATTCCGACTCAAGCATTCTTGCAGGGATTACACTGAATGTTATTATTCAGGATACAAATTGCAGTGGATTTCTTGGAACCATAGAAGCTTTACAGCTAATGGAGAAGGATGTGGTTGCCATCATCGGCCCGCAATCCTCTGGAATAGCTCATGTGATCTCCCACGTTGTTAACGAACTTCACGTGCCACTTCTGTCATTTGCTGCAACAGACCCCACACTTTCCGCACTGCAGTACCCTTATTTCCTCCGCATGACGCAAAGTGACTATTTCCAGATGTACGCAATTGCTGATTTGGTCGAATATTATGGATGGAAAGAGGTGATCGCCATCTTTGTGGATGACGATTACGGAAGAAGTGGCATATCTGTGCTGGGTGATGCCCTAGCAAAGAAACGTTCCAAGATCTCTTACAAGGCTGCCTTCACTCCTGGAGCCCCCATAAGTGCAATTAATGACTTGTTGGTTGAAGTAAATCTAATGGAATCTCGGGTTTATGTCGTACATGTAAATCCTGACTCTGGTCTAACGGTTTTCTCTGTTGCAAAGAATCTTGGTATGACGACTAGCGGCTATGTATGGATTGCAACAGATTGGCTCCCATCTGTTTTAGATTCTTTGGAACCAGTGGACTCTGACACGATGAATCTCTTACAAGGGGTCCTTGCACTTCGCCATCACACTCCAGATTCAAATCTCAAAAAGGGTTTTATGTCTCGGTGGAGCAACTTACGACGGAAAGGGAATGCTAGCTCAAGCTTGAATTCATATGGGCTCTATGCCTATGATTCCGTTTGGTTAGTTGCACGTGCTCTTGATGCATTCCTGAATGAAGGACAAAAAATTTCTTTCTCTAATGATCCCAGGTTGCATGATGCGAATGGAAGCACACTACACTTAGCAGTACTGCGTGCCTTCGAAGGAGGCCAGAGGTTATTTCAAAAACTTACTGTGACAAACTTTACGGGTCTATCTGGTGAGATTCAGTTTGATCCAGAGAAGAATCTGATTCATCCAGCATACGATGTTATCAACATTGGTTCTGGGTCCCGCAGGATTGGATATTGGTCTAATTATTCGGGTCTCTCAGTTGTTACACCAGAAATCTTATATAGGAAGCCTCCAAACACTTCTACCAGTAGCCAGCAGCTTTATAGTGTAATATGGCCTGGTGAAACTCCGACAAGGCCACGCGGGTGGGTGTTTCCCAACAATGGGAAGCCTCTAAGAATTGGGATTCCTAACCGAGTAAGTTATAAGGAGTTTGTGACCAAAGAAAAGGGCCCGAACGTGGTAAAGGGATTTTGTATAGATGTGTTTGAAGATGCCATGAACTTGTTGCAGTATGCTGTTCCACACACCTATATATTGTACGGGGATGGTTTGAGAAACCCCAGTTACAATGAACTAGTGGATATGGTTGCCGCAAATAACTTTGATGCAGCTGTTGGGGACATAACCATTGTTACCAATAGGACGAGGATTGTTGATTTTACACAACCTTACATTGGATCAGGCCTTGTTGTAGTTGCTCCTGTCAGAGAGATAAAGTCAAGTGCTTGGGCTTTTCTACAGCCATTTACGTTAGAAATGTGGTTGGTCACGGGTGCTTTCTTTCTCTTAGTGGGAGCTGTTGTTTGGATTCTCGAGCATCGGATTAACACTGAATTCCGTGGCCCACCAAGGCACCAGCTTATCACAGTTTTTTGGTTTAGTTTCTCAACGATGTTTTTTGCGCACAGAGAGAACACTGTGAGCACCCTTGGACGTTTGGTGCTGATCATATGGCTCTTTGTAGTATTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCAATACTCACAGTGCGGCAGCTGTCATCACGTATTGAAGGGATTGACAGCTTGATCTCAAGTAATGAACGAATTGGGGTTCAGGATGGATCCTTTTCGAAGAACTATCTGATCGATGAGCTCAATATTGCAGAGTCCAGGATTGTTATCCTGAAGGATCAGGATGATTATGTCAATTCCCTTATGCTAGGACCAGACAAAGGTGGGGTCGCAGCCATTGTCGATGAACTTCCTTATGTTGAGCTATTCTTGTCCAACACCAACTGCAAGTTCAAGATTGTGGGACAGGAGTTCACAAAAAGTGGATGGGGATTTGCTTTCCAAAGGGACTCTCCTCTCGCGGTCGACCTATCAACTGCCATCCTTCAACTCTCAGAGAATGGTGATCTACAAAGGATCCATGATAAATGGTTGTCCCGCACTGGGTGCTCCACACAGGCTACTCAAATTGATTCAGACCGACTCTCTCTCAAAAGCTTCTGGGGCCTCTTCCTCATATGCGGCATTGCATGCTTTCTTGCTCTTCTTGTATTTTTCATTAGGGTGTTCTGTCAGTTTCGAAAGTATAGCCCAGAGGAGGAAAACGAGGAGGTTGAACCGGAAAGACCCCACTCAAGTACTCGACGCACAAGCCGCACAACTAGCTTCAAGAACTTAATTGATTTTGTGGACAAGAAGGAACAGGAGATCAAGAGCCAGCTCAAGAGGAAGACAAGTGATAGTTGTAAACAACAGCAAGAAGGACAAAGCAGTTCACCTTCTTAA 2826 0.4469 MELCLVIGSGGLFVARLLLLLLLCLLAPTEVKGQVRNASSPSSRPSVLNVGALFTFNSTIGRVAKPAIAAAVDDVNSDSSILAGITLNVIIQDTNCSGFLGTIEALQLMEKDVVAIIGPQSSGIAHVISHVVNELHVPLLSFAATDPTLSALQYPYFLRMTQSDYFQMYAIADLVEYYGWKEVIAIFVDDDYGRSGISVLGDALAKKRSKISYKAAFTPGAPISAINDLLVEVNLMESRVYVVHVNPDSGLTVFSVAKNLGMTTSGYVWIATDWLPSVLDSLEPVDSDTMNLLQGVLALRHHTPDSNLKKGFMSRWSNLRRKGNASSSLNSYGLYAYDSVWLVARALDAFLNEGQKISFSNDPRLHDANGSTLHLAVLRAFEGGQRLFQKLTVTNFTGLSGEIQFDPEKNLIHPAYDVINIGSGSRRIGYWSNYSGLSVVTPEILYRKPPNTSTSSQQLYSVIWPGETPTRPRGWVFPNNGKPLRIGIPNRVSYKEFVTKEKGPNVVKGFCIDVFEDAMNLLQYAVPHTYILYGDGLRNPSYNELVDMVAANNFDAAVGDITIVTNRTRIVDFTQPYIGSGLVVVAPVREIKSSAWAFLQPFTLEMWLVTGAFFLLVGAVVWILEHRINTEFRGPPRHQLITVFWFSFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVRQLSSRIEGIDSLISSNERIGVQDGSFSKNYLIDELNIAESRIVILKDQDDYVNSLMLGPDKGGVAAIVDELPYVELFLSNTNCKFKIVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQRIHDKWLSRTGCSTQATQIDSDRLSLKSFWGLFLICGIACFLALLVFFIRVFCQFRKYSPEEENEEVEPERPHSSTRRTSRTTSFKNLIDFVDKKEQEIKSQLKRKTSDSCKQQQEGQSSSPS* 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00544 941 MobiDBLite consensus disorder prediction 919 941 - -
Eupl06g00544 941 Gene3D - 479 595 - -
Eupl06g00544 941 FunFam Glutamate receptor 595 725 - -
Eupl06g00544 941 SUPERFAMILY Periplasmic binding protein-like II 459 825 - -
Eupl06g00544 941 SMART GluR_14 485 827 IPR001320 GO:0015276|GO:0016020
Eupl06g00544 941 FunFam Glutamate receptor 163 323 - -
Eupl06g00544 941 CDD PBP1_GABAb_receptor_plant 49 440 IPR044440 -
Eupl06g00544 941 MobiDBLite consensus disorder prediction 881 895 - -
Eupl06g00544 941 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 61 77 - -
Eupl06g00544 941 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 121 149 - -
Eupl06g00544 941 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 336 348 - -
Eupl06g00544 941 MobiDBLite consensus disorder prediction 881 900 - -
Eupl06g00544 941 FunFam Glutamate receptor 721 829 - -
Eupl06g00544 941 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 49 892 IPR015683 -
Eupl06g00544 941 Pfam Receptor family ligand binding region 65 421 IPR001828 -
Eupl06g00544 941 Gene3D - 163 437 - -
Eupl06g00544 941 CDD GluR_Plant 482 825 - -
Eupl06g00544 941 Pfam Ligand-gated ion channel 827 858 IPR001320 GO:0015276|GO:0016020
Eupl06g00544 941 Gene3D - 596 718 - -
Eupl06g00544 941 FunFam Glutamate receptor 479 595 - -
Eupl06g00544 941 SUPERFAMILY Periplasmic binding protein-like I 42 476 IPR028082 -
Eupl06g00544 941 PIRSF IGluLR_plant 12 941 IPR017103 -
Eupl06g00544 941 Gene3D - 719 828 - -
Eupl06g00544 941 Gene3D - 67 413 - -
Eupl06g00544 941 Pfam Bacterial extracellular solute-binding proteins, family 3 496 826 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00544 Eupl-Chr6 7907952 7914344 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00544 44 792 Ion Channels AT1G05200 70.533 0.0 1124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00544 K05387 - ming:122081886 1452.96