Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00542 ATGGGATATGGTCTGCTTGTACCACTCGTCGTTTTGATCTGCGTCCAACTTAATGGTTATGTAGACTGCCAAAGGCCTACAGTTGTGAACGTTGGTGCGGTTTTCACTTATGATTCCGTCATTGGTAGAGTAGCTAAGGTCGCCCTCAACACTGCGGTAGCGGATGTTAATTCCGATCCGAGAATTCTTAGAGGAACCAAATTGAATCTCATCACGGAGGATGCGTTTTGCAATGTTTTCATGGGCTCCGTTGGAGCCTTTCAGGTACTTGAGAGAGACACGGTGGCCATAATTGGTCCACAATCGTCTTCAATAGCCCATATGATCTCTTTCATTGCTAATGGACTTCAAGTGCCTCTTATCTCATACGCGGCCACAGATCCGACTCTCTCTGCTCTTCAGTTTCCGTTCTTTCTCCGAACCACCCCAAGTGATTCATACCAGATGGCTGCCATGGCTGATTTGATTGACTATTATGGGTGGCGTGAGGTCATGGCCATCTTCGTAGATGATGATTATGGAAGGAATGGAATAGCCTCCTTGGATGACGAACTTGCAAAGAAAATGGCAAAGATTTCTTATAAATTGGCTTTGCCGATCAATGCGGCTCGTAGCTACATCACCAATTTGCTGAATAAATCCAAAAATTATGGGCCTCGTGTTTATGTCGTTCATGTTAATCCTGGATCGGGTCTTGCAATATTCTCTATAGCCCAAGACCTTCAAATGATGACCAAAGATTATGTGTGGCTTGCAACCGATTGGCTTTCTGCTACTTTGGATTCATCATCACCCATTAACCGTACATCCCTCCATACCCTTCAAGGGGTAGTTGGGCTTCGTCAGCATATTCCAGAGTCTAATCAGAAGGCGGCTTTTATTTCTCGATGGAGAGAATTACGCCAGCAAGGATTAGTAAGTTCTGAATTGAACACTTATGGACTTTACGCTTATGATACAGTGTGGGCAGTCGCATATGCCATTGATGAATTCTTAAAGGAATATGGGAATATCACGTTCTCTTCTAATGAAAAGTTACATGATGTGAAAGCATCAGCGCTGCAGTTGGAAAAGCTCAAAACCTTTGATGGTGGGAAACGTCTGCTTAACAAATTGCTGCAGACAAACATCACAGGTTTAACAGGTCCAGTTCAATTTGATTCATATCGGAACCTCATGGGTGGTTCTTATGATGTTATTAATTTTGATCGGGAGGCAATCCGTATGATTGGTTACTGGTCTAATTATTCAGGCTTTTCAGTTGTACCCCCGGAAACATTAAACAGGGAACAACAGAGCTATTCCCGTGTGAATCAGAAACTCAACAACGCTACATGGCCTGGTGGGAAGACAGACAAGCCACGTGGTTGGGTGCTTGGAAGCCATGAAAGGCCATTGAGAATTGGAGTGCCAAACAGGGCCAGTTTTGTTGAGTTTGCGACAGAAGTGCATGACACCCATGAAATCCAAGGATACTGTATTGATGTATTTAAAGCAGCACGAGAATTAGTCCCCTATGAAATTCCATACAAATTCAAGGTTTTTGGGGATGGCCGGTCCAATCCCAGTTACAATGAGCTTGTGAGAATGGTTGCAGAAGATGTGTTTGATGCTGCTGTTGGGGACATTGCCATTGTCACAAATAGGACAAAGATTGCTGATTTCACTCAGCCTTATGCTGCTACCGGTCTTGTGATAGTGGTTCCCATTAGAAATACAAAGTCAGGTGCTTGGGTATACCTCAAGCCGTTTACAGTGGAGATGTGGGGTGTTACTGCAGCATTTTTCATCATGATTGGCGTGGTTATTTGGATTCTTGAGCATCGGACCAATGACGATTTCCGGGGCCCACCTAGGCGACAGCTCATAACCATGTTCCTGTTTGGCTTCTCAACACTGTTTAGGACGAGTCAAGAAGATACCGTGAGTACACTCGGACGGATGGTGATGATGATATGGCTTTTCCTGTTGATGGTGGTCACATCCAGCTACACAGCTAGCTTGACTTCTATACTTACAATCCAGCAGCTGTCATCACCGATCACAGGAATTGACAGTTTAATTGCAAGCAACCAGCCCATTGGGTATCAAACGGGGTCATTTGCTTGGAGCTATCTGATCGACAGTATGAACATACCTCAGTCGAGGCTGGTTTCTCTTGGCAACCCCGAAGAGTATGAAAAAGCATTGCGGCTAGGACCAAACAATGGAGGGGTAGCTGCAATTGTGGACGAGCTTCCATATGTAGAGCTGTTTCTGTCAAAGCAGACCAAAATTGGAGTTGTCGGGCAGATGTTCACCAAGGGTGGATGGGGATTCGCTTTTAAAAGAGACTCTCCTTTAGCCATTGACATGTCAACAGCGATCCTGAAACTTTCTGAGAGCGGAGAACTCCAGAAGATCCACGATGAGTGGTTTTGTAAGCTGGGTTGTGTCACAGAGGCAGCGCATTCCACGCCCAACCAACTCCATCTAATCAGCTTCTGGGGCCTGTTTCTTTTATGTGGGATTTTCTCCATCATCGCCTTTATAGTGTATCTTCTACGAACGATTTGCCAATTTGTTCGAAAACAGAGGGAGCTTCCATTACCATCATCAAGAATTCGTTGTTGTCAGGTTGTTTATAACTTCTTTAATTTCGTCGATGAGAAGCAAGAAGCTATAAAGAAATTGTTTAAGCAGTGTGACGACCCCCACCCCCAAGCGAGCTTACCGACACCGACAGTGCAGATGTGA 2736 0.4485 MGYGLLVPLVVLICVQLNGYVDCQRPTVVNVGAVFTYDSVIGRVAKVALNTAVADVNSDPRILRGTKLNLITEDAFCNVFMGSVGAFQVLERDTVAIIGPQSSSIAHMISFIANGLQVPLISYAATDPTLSALQFPFFLRTTPSDSYQMAAMADLIDYYGWREVMAIFVDDDYGRNGIASLDDELAKKMAKISYKLALPINAARSYITNLLNKSKNYGPRVYVVHVNPGSGLAIFSIAQDLQMMTKDYVWLATDWLSATLDSSSPINRTSLHTLQGVVGLRQHIPESNQKAAFISRWRELRQQGLVSSELNTYGLYAYDTVWAVAYAIDEFLKEYGNITFSSNEKLHDVKASALQLEKLKTFDGGKRLLNKLLQTNITGLTGPVQFDSYRNLMGGSYDVINFDREAIRMIGYWSNYSGFSVVPPETLNREQQSYSRVNQKLNNATWPGGKTDKPRGWVLGSHERPLRIGVPNRASFVEFATEVHDTHEIQGYCIDVFKAARELVPYEIPYKFKVFGDGRSNPSYNELVRMVAEDVFDAAVGDIAIVTNRTKIADFTQPYAATGLVIVVPIRNTKSGAWVYLKPFTVEMWGVTAAFFIMIGVVIWILEHRTNDDFRGPPRRQLITMFLFGFSTLFRTSQEDTVSTLGRMVMMIWLFLLMVVTSSYTASLTSILTIQQLSSPITGIDSLIASNQPIGYQTGSFAWSYLIDSMNIPQSRLVSLGNPEEYEKALRLGPNNGGVAAIVDELPYVELFLSKQTKIGVVGQMFTKGGWGFAFKRDSPLAIDMSTAILKLSESGELQKIHDEWFCKLGCVTEAAHSTPNQLHLISFWGLFLLCGIFSIIAFIVYLLRTICQFVRKQRELPLPSSRIRCCQVVYNFFNFVDEKQEAIKKLFKQCDDPHPQASLPTPTVQM* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00542 911 Gene3D - 144 419 - -
Eupl06g00542 911 SUPERFAMILY Periplasmic binding protein-like I 23 457 IPR028082 -
Eupl06g00542 911 Gene3D - 47 394 - -
Eupl06g00542 911 Gene3D - 577 711 - -
Eupl06g00542 911 FunFam Glutamate receptor 461 577 - -
Eupl06g00542 911 Pfam Ligand-gated ion channel 807 837 IPR001320 GO:0015276|GO:0016020
Eupl06g00542 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 866 IPR015683 -
Eupl06g00542 911 FunFam Glutamate receptor 144 307 - -
Eupl06g00542 911 Pfam Bacterial extracellular solute-binding proteins, family 3 484 806 IPR001638 -
Eupl06g00542 911 Gene3D - 738 813 - -
Eupl06g00542 911 Gene3D - 462 576 - -
Eupl06g00542 911 PIRSF IGluLR_plant 1 895 IPR017103 -
Eupl06g00542 911 CDD GluR_Plant 464 806 - -
Eupl06g00542 911 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Eupl06g00542 911 Pfam Receptor family ligand binding region 47 404 IPR001828 -
Eupl06g00542 911 FunFam Glutamate receptor 703 810 - -
Eupl06g00542 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Eupl06g00542 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Eupl06g00542 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
Eupl06g00542 911 FunFam Glutamate receptor 577 707 - -
Eupl06g00542 911 SUPERFAMILY Periplasmic binding protein-like II 445 806 - -
Eupl06g00542 911 CDD PBP1_GABAb_receptor_plant 30 423 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00542 Eupl-Chr6 7872252 7898522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00542 1 903 Ion Channels AT2G32400 55.725 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00542 K05387 - nnu:104604850 1326.61