Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00518 ATGATGCAACCAGCAACAGGCATGATTCCTCCTCCGATGGCCCCACCAACGATGGATCAACAGCACCACCAGCAGCAGCCACCTCCGCAGCAGCAATGGATGATGATGCCGCCTCAGCAGCATCAGGTCCCACCCGTGTGGAACCAGCAACCACCGCAAGTGTCTCAGCCGCAGGTGCCGACTCAGCAACCTCAGCCCCAAGCGCAGCAGCAGCTGCAGTACCCAACTGCGCAGCCGACGAGCGCTGACGAGATACGCACGCTTTGGATCGGGGATTTGCAGTACTGGATGGAAGAGAGCTATCTCCACGGCTGCTTCGCTACAACAGGCGAGATTGTTTCAGTGAAAGTTATCCGCAATAAGCAAACTGGCCAGTCGGAGGGTTATGGGTTTATCGAGTTTGTAACTCGTGCTGCTGCAGAAAGAACTTTACAGACATACAATGGCACACTTATGCCTAATGTTGAGCAGAATTTCAGATTGAACTGGGCTTCTTTTGGTTCTGGCGATAGGCGTACAGATGATGGTGCTGACTTTACGATATTTGTTGGAGATTTGGCTTCTGATGTAACAGATTACACGTTGCAAGAGACATTCAGGAGTCACTATACCTCTGTCAAGGGTGCAAAGGTTGTCACTGATAGGGCCACCGGACGATCGAAGGGCTATGGGTTTGTGAGATTTGGAGATGAAAGCGAACAATTGCGTGCTATGACTGAAATGAACGGTATGTTCTGTTCAACTAGACCTATGCGTATTGGCCCGGCCACTACCAAGAAGACTGTGGGTGGTCAGCAACAGTATCAGAAAGCTTCCTACCAGAATACTCCAGCAACTCAGAACGAGAATGATCCAAATAATACAACTATATTTGTTGGTGGTTTGGATTCAAATGTTACTGAAGACCATTTGAGACAAGTTTTTAGCCAATTCGGCGAATTAGTCATGTGA 951 0.4911 MMQPATGMIPPPMAPPTMDQQHHQQQPPPQQQWMMMPPQQHQVPPVWNQQPPQVSQPQVPTQQPQPQAQQQLQYPTAQPTSADEIRTLWIGDLQYWMEESYLHGCFATTGEIVSVKVIRNKQTGQSEGYGFIEFVTRAAAERTLQTYNGTLMPNVEQNFRLNWASFGSGDRRTDDGADFTIFVGDLASDVTDYTLQETFRSHYTSVKGAKVVTDRATGRSKGYGFVRFGDESEQLRAMTEMNGMFCSTRPMRIGPATTKKTVGGQQQYQKASYQNTPATQNENDPNNTTIFVGGLDSNVTEDHLRQVFSQFGELVM* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00518 316 SUPERFAMILY RNA-binding domain, RBD 51 168 IPR035979 GO:0003676
Eupl06g00518 316 Gene3D - 178 254 IPR012677 -
Eupl06g00518 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 314 IPR000504 GO:0003723
Eupl06g00518 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 249 IPR000504 GO:0003723
Eupl06g00518 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 154 IPR000504 GO:0003723
Eupl06g00518 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 258 IPR000504 GO:0003723
Eupl06g00518 316 FunFam Polyadenylate-binding protein RBP47B 85 165 - -
Eupl06g00518 316 Gene3D - 42 176 IPR012677 -
Eupl06g00518 316 Gene3D - 259 316 IPR012677 -
Eupl06g00518 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 166 IPR000504 GO:0003723
Eupl06g00518 316 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 71 308 - -
Eupl06g00518 316 FunFam Polyadenylate-binding protein RBP45C 169 263 - -
Eupl06g00518 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 316 IPR000504 GO:0003723
Eupl06g00518 316 SMART rrm1_1 87 162 IPR000504 GO:0003723
Eupl06g00518 316 SMART rrm1_1 180 254 IPR000504 GO:0003723
Eupl06g00518 316 SUPERFAMILY RNA-binding domain, RBD 178 314 IPR035979 GO:0003676
Eupl06g00518 316 MobiDBLite consensus disorder prediction 1 80 - -
Eupl06g00518 316 MobiDBLite consensus disorder prediction 18 80 - -
Eupl06g00518 316 CDD RRM2_SECp43_like 178 257 - -
Eupl06g00518 316 CDD RRM1_SECp43_like 87 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00518 Eupl-Chr6 7634072 7639372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00518 180 315 Eukaryotic Initiation Factors Gene Family AT1G22760 26.471 2.67e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00518 - - nnu:104612820 446.047