Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00516 ATGAAGAAATCTAAGAACTCGTTCCCTCGCAAGCAAAAACGGCTTTCTGAGGTGCAAGAAATCGAATTGCTCGAGTCATGGATCGAATTCGGGAAACCAGACTCAGGTTCGAACCCTCTTTCGATCAAACCATTGCCGTCCAATGCTCCAATTGGCCGCCTAGACGAGAATTCCTTCTCCTTTTACGTCGGTTGCAAAAAGTTCAATCAGTTGCCGCTGTCGCAGAAGACGAAAGATGCCTTGACTGAATCGAAGTATACTGTGATGACTGAAATTCAGCGAGCTTCGCTGCCGCATTCGTTGTGCGGACGAGATATCCTCGGTGCCGCGAAGACCGGTTCCGGCAAGACCCTTGCCTTTCTCATACCAGTCTTAGAGATGTTATACAGAGCAAGATGGGGTCCTGAGGATGGGGTAGGCAGCATTATAATAACTCCCACAAGGGAATTGGCGGGTCAACTTTTTGATGTATTGAAAACCGTAGGGAAGCACCATGGTTTCAGTGCTGGCCTTCTAATTGGTGGCCGCAAAGATGTCGAAACAGAGAAGGAGCATGTCAATGATTTGAACATCTTGGTGTGCACCCCGGGTCGGCTTCTTCAGCACATGAACGAGACTCCGAACTTTGATTGTTCACAGCTCCAGATTTTGGTGCTTGATGAGGCAGACCGAATTCTTGATGTGGGATTTAAACCCGAATTAAATGCAATCATCTCGCAGCTGCCGAAACGGCGGCAAACCATGCTTTTCTCAGCAACCCAAACAAAGTCCGTTCAGGATCTTGCAAGGCTGAGTTTGAAGGACCCGGAGTATCTCAGTGTGCATGAAGAGTCTGTGACAGCCACCCCTAGTCGCTTGCAGCAAACTGCGAGTATTGTTCCTCTTGACCAAAAATTTGACATGCTGTGGAGCTTCATAAAGGCACATCTTAATTCGAAGATTCTTGTGTTTCTTTCAACCTGCAAGCAGGCAAAATTTGTCTTTGAAGCATTCAAGAAACTGCGTCCTGGAATCCCTCTGAAATGTCTACATGGTCGGATGAAGCAGGAGCGAAGAATGGGGATATATTCCCAGTTCTGTGAGAAGCGCTCAGTCCTCTTCTCGACTGATGTGGCGTCAAGAGGCCTTGATTTCAATAAGGAAGTTGACTGGGTTGTCCAGGTGGACTGTCCAGAAGATGTTGCATCTTACATTCACAGAGTTGGCCGCACAGCTCGTTATCATTCTATAGGGAGGTCATTTTTATTCCTGATGCCCTCGGAAGAAGAAATGCTCAAGAAGTTGCAAGCAGCAAAAGTACCAATACAACTTATGAAGGCAAACACGAAAAGACTGCATTCGGTTTCCGGATTGTTGGCAGCTTTACTAGTTAAGTATCCAGATATGCAGTATCTAGCTCAAAGGGCTTTCATCACATATTTGAGGTCTATCTACAAACAGCGAGATAAAGAAGTCTTCGATGTTATGAAACTCCCTATAGAAGAGTTCTCCGCATCATTGGGTTTGCCCATGACCCCAAAAATCCGTTTCTTGAACCAGAAAACCAAGGGCAAGACGCTGCCTGAGGAAGCTTCTCAACAAGAGAATGCCATCAAAGATGATGTAGCAAAGATCCCAAGAAGAAAGGTAGGACCTGGTAAATCCAAGGAGGAAGAAGTGGAAAATGGTGGTCTGTTAGCAAAGGAGACCCAAATGGATGGGGGACGAAATGAAGGTAAATCCAAGGAAGAAGAAGTGGAAAATAGTTTTCTGTTAGCAAAGGAGACTCAAACGGATGGGGGAGGAAATGAAGCTGAAAATGAAGCTGCTGTCCTGGCAACAAGGATCCTGAAGAAGAAGAAGTTGAAGATCAATGTACACAGACCAGTAGGGACAAGGGTGGTCTTTGATGAGGAGGGCAATACACTTCCCCCACTTGCAGCATTATCTGGCACGAAGAGTGGGAATGGCTTGCTTCAGATTGACAAAGTAAAAGAACGATATGAGAAGCTGAAGGAAGAGATGAAACATCGAGACAAGGAAGACAAACTTCTGCTCCGCCAGCGTCTCCGAGAGAAGCGAACTAAGGAGAAGATGAAGTTGAAGAGAGGGAGGGAAGAAGAGGGTGATGAGGAGGATGAGGATATTACGGGGTCAGATGGAGAAGAAGCTGGTGACAGAGTCACCAAGAGATCAAAGGTATATTTTGACAGTGACAGTGATGACGATGAGAAGGCAAAGAAGGATAAAGTGGGTTTTAGTGCCGACTCCATTTCTCTGGTGGAGCAAGAAGCTCTGGCTCTTAAGTTGTTGGGTTCTATGCACTCATAG 2310 0.4619 MKKSKNSFPRKQKRLSEVQEIELLESWIEFGKPDSGSNPLSIKPLPSNAPIGRLDENSFSFYVGCKKFNQLPLSQKTKDALTESKYTVMTEIQRASLPHSLCGRDILGAAKTGSGKTLAFLIPVLEMLYRARWGPEDGVGSIIITPTRELAGQLFDVLKTVGKHHGFSAGLLIGGRKDVETEKEHVNDLNILVCTPGRLLQHMNETPNFDCSQLQILVLDEADRILDVGFKPELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPSRLQQTASIVPLDQKFDMLWSFIKAHLNSKILVFLSTCKQAKFVFEAFKKLRPGIPLKCLHGRMKQERRMGIYSQFCEKRSVLFSTDVASRGLDFNKEVDWVVQVDCPEDVASYIHRVGRTARYHSIGRSFLFLMPSEEEMLKKLQAAKVPIQLMKANTKRLHSVSGLLAALLVKYPDMQYLAQRAFITYLRSIYKQRDKEVFDVMKLPIEEFSASLGLPMTPKIRFLNQKTKGKTLPEEASQQENAIKDDVAKIPRRKVGPGKSKEEEVENGGLLAKETQMDGGRNEGKSKEEEVENSFLLAKETQTDGGGNEAENEAAVLATRILKKKKLKINVHRPVGTRVVFDEEGNTLPPLAALSGTKSGNGLLQIDKVKERYEKLKEEMKHRDKEDKLLLRQRLREKRTKEKMKLKRGREEEGDEEDEDITGSDGEEAGDRVTKRSKVYFDSDSDDDEKAKKDKVGFSADSISLVEQEALALKLLGSMHS* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00516 769 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Eupl06g00516 769 Coils Coil 680 700 - -
Eupl06g00516 769 SMART ultradead3 85 289 IPR014001 -
Eupl06g00516 769 MobiDBLite consensus disorder prediction 566 581 - -
Eupl06g00516 769 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Eupl06g00516 769 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Eupl06g00516 769 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Eupl06g00516 769 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 446 IPR001650 -
Eupl06g00516 769 PANTHER RNA HELICASE 65 570 - -
Eupl06g00516 769 MobiDBLite consensus disorder prediction 714 745 - -
Eupl06g00516 769 Coils Coil 654 674 - -
Eupl06g00516 769 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Eupl06g00516 769 SMART DUF4217_3 447 510 IPR025313 -
Eupl06g00516 769 MobiDBLite consensus disorder prediction 688 747 - -
Eupl06g00516 769 Gene3D - 57 278 IPR027417 -
Eupl06g00516 769 Gene3D - 286 537 IPR027417 -
Eupl06g00516 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 274 IPR027417 -
Eupl06g00516 769 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 424 IPR027417 -
Eupl06g00516 769 MobiDBLite consensus disorder prediction 541 581 - -
Eupl06g00516 769 CDD DEADc_DDX10 77 275 - -
Eupl06g00516 769 CDD SF2_C_DEAD 286 417 - -
Eupl06g00516 769 SMART helicmild6 325 408 IPR001650 -
Eupl06g00516 769 MobiDBLite consensus disorder prediction 541 557 - -
Eupl06g00516 769 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00516 Eupl-Chr6 7617033 7628709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00516 68 429 Eukaryotic Initiation Factors Gene Family AT3G19760 25.620 4.78e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00516 K14776 - ming:122074689 1088.17