Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00501 ATGCACGATCAACATTCTATCTCTCCGTCTGCTTTTGCAGGAGGGGCTCTTGTAGGAACAATTACTGGAGCTATTATAGGCCAAACAACAGAAACTGGGTTTTTTCGTGGGGCCGGAATCGGTGCACTCGCTGGCGCTGTTGTGGCCTTTGAGTTACTTGAATCGTTGATCAACGGGGAGTCGTTATCGAAGATTGCCATCTTTGGTAGCCTCTTGAATGGGAAGATTTTCAGGGAATGGGTGTGTCCTGCCATGCTTAAGGCATATCAATGGCAAATTGGAACGCTAGAGACAAGCTACAGAGAAATCTCAGACATTTACGACATCGACGGCACAAAAGGAATGTCACCCAACTTTGTTAAGAAGCTCCCTATGTTCAATATCAATAGTAGCAAAACAATGGATCAATGTGGTGAGAAGATCTGTTGTTCAATTTGCTTACAGGATTTCAAAGAGGGCGAGAGTGCAAGGAGACTCCCCAATTGTAGACACTATTTTCATTTGCTTTGCATAGACGAATGGCTAGTCAGACAAGGATCTTGCCCTATGTGTAGAGAAGATGTTTGA 567 0.4427 MHDQHSISPSAFAGGALVGTITGAIIGQTTETGFFRGAGIGALAGAVVAFELLESLINGESLSKIAIFGSLLNGKIFREWVCPAMLKAYQWQIGTLETSYREISDIYDIDGTKGMSPNFVKKLPMFNINSSKTMDQCGEKICCSICLQDFKEGESARRLPNCRHYFHLLCIDEWLVRQGSCPMCREDV* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00501 188 CDD RING-H2_EL5-like 142 185 - -
Eupl06g00501 188 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 187 IPR044523 -
Eupl06g00501 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Eupl06g00501 188 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Eupl06g00501 188 SUPERFAMILY RING/U-box 123 188 - -
Eupl06g00501 188 SMART ring_2 143 184 IPR001841 -
Eupl06g00501 188 Pfam Ring finger domain 143 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00501 Eupl-Chr6 7421098 7422482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00501 15 188 C3H Transcription Factor Family AT5G66070 43.716 7.27e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00501 - - tss:122643576 258.455