Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00477 ATGATGCCCAACAACGGCGCTACAGGGAGCGACGATGCTTCGTCGGCTGGTGGGGCCGGTGGTGCAGCGCTAAAGAAAGGGCCGTGGACGGCTGCTGAGGACGCGATCCTGATGGAGTATGTGAAGAAACAAGGAGAAGGTAACTGGAACGCTGTTCAGAAGAACTCTGGGTTGTCTCGGTGTGGAAAGAGCTGTCGTCTTCGTTGGGCTAATCATCTCAGGCCTAATCTTAAGAAGGGTTCCTTCTCTCCCGATGAAGAACGTCTCATTCTCGAGCTTCACGCCAAGCTCGGCAACAAATGGGCTCGCATGGCCGCTCAGTTACCTGGGCGAACAGACAACGAGATCAAGAACTACTGGAACACCCGAGTCAAGCGACGCCAACGCGCCGGATTACCGCTCTATCCGCACGATATACAGAAACAAGTGGCTGCGTTCCACCTTCACCAGCATCACCAGCACCGTCCATCTCCGTCTCCTCCACCACCGACGCAGTTCTCGTCGCAGCAGCTGAAACCTAATTTCGGGTCTCCGTTATCCCTGTTTGATCCGATGAATTTTTCTTCGACGACCCCTTTTATGGCCCACCACAACAGTACCCCTTTTCTTCCCACTCAAATTCATGGACTGAAGCGGTTCCAGGGTAGCAATGTCGGGTTCTCTCAACCCTTTTCTCATCCTCCTCCTACTCTACCAACTTCATCATCTCTGTTCAATCATAGTCTGTCTACCCAATTGTCACAAGCACCGACGCTTCAATTTAATTCCGGCAATTACGACTTTAATCCACCGCCGCTCATGCGTACCCATTTCGAACCCGAAGGCATGGGTCCTCCCGGTTCTGCTTTCTCCATGAAATTGGAGCTCCCTTCAAGCCAACTACCCCAGCCAGCAGCTAACGCTGTTGCCTCGGGCACTACCAGCGATTATAAGATCACCAGTTCATTAGCGAGGAGTAATAGTGGGTTACTGGATGCTCTGTTACAGGAAGCCCAAGCTATGGGTGGCAGGGATGATTCGAGGAGAGAAGGGTTGTTATCATCTCAAGAAGAAAAATGCGGATTTACTGGATTAGTCAGTGATGCCCCACCTTCCGGGTCATATTTCTGCGAGAGCACCACCACCCCACCATTAGGATCTGCAAGCCACTGGGAAGATTCAAGCTCTGCCCATTCTTCCATTGGGGTGAAGATGAAGAAGGAACAAACGGATGAGATCAATTCTATTGACGACGACGACGACTTGTCCAGTTTGCTCGATATTATCCCATCTACCATGTTGGTTCCTGAGTTCTACAGCGATAGTGGTGAGATATCAAATGGGCAATCCTCGGGTGCAACCGACGAAGAAATGGGGCTCGATATGCAGCATCTACCTACCACTACCACCACCACCACCAACACCATCCCCGGCCACAACTGGACCCTTGGCGCTTGGAACAACATGCCTGAGATGTGCTAA 1461 0.5168 MMPNNGATGSDDASSAGGAGGAALKKGPWTAAEDAILMEYVKKQGEGNWNAVQKNSGLSRCGKSCRLRWANHLRPNLKKGSFSPDEERLILELHAKLGNKWARMAAQLPGRTDNEIKNYWNTRVKRRQRAGLPLYPHDIQKQVAAFHLHQHHQHRPSPSPPPPTQFSSQQLKPNFGSPLSLFDPMNFSSTTPFMAHHNSTPFLPTQIHGLKRFQGSNVGFSQPFSHPPPTLPTSSSLFNHSLSTQLSQAPTLQFNSGNYDFNPPPLMRTHFEPEGMGPPGSAFSMKLELPSSQLPQPAANAVASGTTSDYKITSSLARSNSGLLDALLQEAQAMGGRDDSRREGLLSSQEEKCGFTGLVSDAPPSGSYFCESTTTPPLGSASHWEDSSSAHSSIGVKMKKEQTDEINSIDDDDDLSSLLDIIPSTMLVPEFYSDSGEISNGQSSGATDEEMGLDMQHLPTTTTTTTNTIPGHNWTLGAWNNMPEMC* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00477 486 SUPERFAMILY Homeodomain-like 24 120 IPR009057 -
Eupl06g00477 486 MobiDBLite consensus disorder prediction 372 396 - -
Eupl06g00477 486 MobiDBLite consensus disorder prediction 372 401 - -
Eupl06g00477 486 CDD SANT 28 73 IPR001005 -
Eupl06g00477 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Eupl06g00477 486 FunFam MYB-related transcription factor 25 78 - -
Eupl06g00477 486 CDD SANT 81 122 IPR001005 -
Eupl06g00477 486 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 8 450 - -
Eupl06g00477 486 Gene3D - 25 78 - -
Eupl06g00477 486 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Eupl06g00477 486 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Eupl06g00477 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Eupl06g00477 486 Gene3D - 81 155 - -
Eupl06g00477 486 MobiDBLite consensus disorder prediction 147 175 - -
Eupl06g00477 486 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Eupl06g00477 486 FunFam Transcription factor MYB97 81 156 - -
Eupl06g00477 486 MobiDBLite consensus disorder prediction 1 25 - -
Eupl06g00477 486 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Eupl06g00477 486 SMART sant 78 126 IPR001005 -
Eupl06g00477 486 SMART sant 25 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00477 Eupl-Chr6 7028932 7032012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00477 21 486 MYB Transcription Factor Family AT2G32460 38.990 1.63e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl06g00477 Myb_DNA-binding 5.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00477 K09422 - nnu:104612781 599.356