Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00468 ATGCAACCAGAACGTGCATCACTTGATTCATTAAGAGGCAAGGTTATAATGGACAATGGTTTGGTAAAGCTTACAATATCAAAACCAGATGGGTTGTTGACGGGCATAAAGTATGGAGGGATGAACAACCTTTTGGATCTCAAGTCAACTGAATCTGGTAGAGGGTATTGGGACATCAACTGGAACTTAACAGGAGGACAAGATAGATATCAATTACTTACAGCGACGGATTATAGCATTGTACATTCGAGTAACGAATCCATAGAGGTTTCATTCAGGAGTAGTTGGGATCCATCTGCAAGAGGCACCACATTGCCATTAAGTGTAGACAAGAGGTTCATATTGAGGAGCGGTATTTCGGGCTTCCACTGCTACGCGATATATGAGCGCCCATCCGGATCTCCTGCATTTGATCTAGTGCAGACAAGGATGGTGTTTAAGTTGAGAAGAGACAAGTTTCATTACATGGCAATCACAGATGAAAAGCAGAGGATAATGCCGATGCCGGAGGATATACTTCCTGACAGAAGTAAACAATTGATTGTACCTGAATCTGTTTTGCTTACTAATCCAATTAATCCTGATCTTAAAGGCGAGGTTGATGACAAGTACCAATATTCAATGGACAATAAGGATGGCGGGGTCCATGGGTGGATAAGCTCCGGCCCTATCATCGGATTCTGGATCATCTTCCCCAGCAATGAGTTCCGGAATGGTGGCCCCACCAAGCAAAATCTTACAGTCCACACCGGTCCTTCATGCCTTGCTATGTTTCATGGCACTCACTATATTGGAGATGATATAGTGGCTCATTTTAGTGAGGGAGAAGCATGGAGGAAGGTCTTTGGCCCATTTTTCGTCTACCTTAACTCCACCCCAAATGTATCCAACGCCCACAATTTATGGTTAGATGCAAAAAAACAGAGACTTTTAGAAGAGACAGCATGGCCATATGATTTCATTTCTTCGCCTTATTTTCTTACTGCAAAAGAACGCGGTTCGGCTTCAGGAAGATTATTTGTTCAAGATAGATTCGTCTCTGGAGCTCTTATCCCTGCAAAATATGCTTATGTCGGCCTGTCAGCCGCAAGGAGCGAAGGAGCTTGGGAAATAGAAAGCAAGGGTTATCAGTTCTGGGTTCAAACAGATACAAATGGATCATTCATCATCAACAATGTTATCCCAGGAGTCTATGGTCTCCATGGTTGGGTTCCTGGTTTTATCGGGAATTACCTTGACAAGGCACTTGTTACCATCTCTGCTGATTCACAAACAAAACTTGGCAATTTGGTCTATGTTCCACCGAGAGACGGTTCAACAGTATGGGAGATCGGCTTCCCAGATCGTACTGCTATCGGTTTCTACGTTCCTGACGTGAACCCATTATATGTCAACAAGTTATACGTTAACAGCTCCGAGAAGTACAGGCAGTATGGCCTTTGGGACAGATACACCGATATACACCCAAAAATTGATCAAGTTTTTACGATAGGCGTTAATGATTCTAAAAAAGATTGGTTTTTTGCGCATGTCGACAGGAGGGGAGCAGAAAAGTATGTTCCATCAACATGGGAAGTCAAATTTAATCTTGATTCAGTAACCAGTGGAATTTACAAGCTGAGGTTGGCGATTGCGTCGGCGACCCGTTCTGACCTTCAGGTCCATGTTAATTATCTGGATGGAGGCCACCTTGTGTTTCAAGTGTTGAATTTAGGGATGGATAACACTGTTTGTCGCCACGGAATTCATGGACTGTATCGGCTCTTCAACGTCAATGTTTCTTCGTCGTTGTTGATTAAAGGAGACAATACCATTTTTCTAACACAAGCAAGGGGAGGCGATGCGCTCTGCGCGATACTCTATGACTACGTAAGGCTCGAAGCCCCGGCAACTTCGGAGAGGTCTGAGTGA 1911 0.4385 MQPERASLDSLRGKVIMDNGLVKLTISKPDGLLTGIKYGGMNNLLDLKSTESGRGYWDINWNLTGGQDRYQLLTATDYSIVHSSNESIEVSFRSSWDPSARGTTLPLSVDKRFILRSGISGFHCYAIYERPSGSPAFDLVQTRMVFKLRRDKFHYMAITDEKQRIMPMPEDILPDRSKQLIVPESVLLTNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSGPIIGFWIIFPSNEFRNGGPTKQNLTVHTGPSCLAMFHGTHYIGDDIVAHFSEGEAWRKVFGPFFVYLNSTPNVSNAHNLWLDAKKQRLLEETAWPYDFISSPYFLTAKERGSASGRLFVQDRFVSGALIPAKYAYVGLSAARSEGAWEIESKGYQFWVQTDTNGSFIINNVIPGVYGLHGWVPGFIGNYLDKALVTISADSQTKLGNLVYVPPRDGSTVWEIGFPDRTAIGFYVPDVNPLYVNKLYVNSSEKYRQYGLWDRYTDIHPKIDQVFTIGVNDSKKDWFFAHVDRRGAEKYVPSTWEVKFNLDSVTSGIYKLRLAIASATRSDLQVHVNYLDGGHLVFQVLNLGMDNTVCRHGIHGLYRLFNVNVSSSLLIKGDNTIFLTQARGGDALCAILYDYVRLEAPATSERSE* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00468 636 SUPERFAMILY Galactose mutarotase-like 20 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Eupl06g00468 636 SUPERFAMILY Galactose-binding domain-like 437 627 IPR008979 -
Eupl06g00468 636 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 14 630 - -
Eupl06g00468 636 Gene3D - 328 428 - -
Eupl06g00468 636 Gene3D - 7 304 IPR014718 GO:0030246
Eupl06g00468 636 Pfam Polysaccharide lyase family 4, domain III 440 626 IPR029411 -
Eupl06g00468 636 CDD RGL4_C 442 627 - -
Eupl06g00468 636 Gene3D - 437 627 - -
Eupl06g00468 636 Pfam Rhamnogalacturonate lyase family 13 200 IPR010325 -
Eupl06g00468 636 CDD RGL4_M 331 430 IPR029413 -
Eupl06g00468 636 CDD RGL4_N 15 298 - -
Eupl06g00468 636 SUPERFAMILY Starch-binding domain-like 374 428 IPR013784 GO:0030246
Eupl06g00468 636 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00468 Eupl-Chr6 6887258 6896054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00468 15 631 Polysaccharide Lyase AT1G09910 48.706 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00468 K18195 - aew:130794941 1070.46