Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00457 ATGAAACGTCGCTCCCGACGCAGTGTTCCGAAACGCGCCGTTAAAGCCAAGAGGCGCCGGACAAGAGGGACAAGAGATCCCCCTGATGAAGAAGATTATGCTCCACACTCCGATTCCGATACCAGCGGCAGCGACGAAGGCGGTGCTTCTTTGCATATTAGTGACGAGTCGATACAACGAGCCGAAGAGAGGAGAGGAAGAAAGGGATTGGGTAATAACGACAAAGGAAAGGCTGTGATTGAAAGTGAGTCAAATTCCGATACTAACAACTCTGATGATTCCAATCATGTTAATTATGTAATGGAAAGGAACAAAAGGGTGTCAAAGAAGAGAAGGAGTGAGAAAGAGAAACCAAAAGGGAAAGGGGAAAAAATGGTTGAAGAAAGCGATAAAGAAGAACTAGATACCTGTATTCCGGATCTCAATGAAGCTTGTGTTGATCGTTTGATTGGATTGAAGAAGAAGAATAATAGGAAGAAGAAAGGAAGAAAGAGAGAGGATGGGCCACCTTTACTATGGGAGGTTTGGCAGGAAGAGAATGAGAGATGGATCGATGCCAATGAAGCAAGAGATATCAATTTTGATTGTCAGGATGAAGAAATGGCAGAAACTGCCGAGGCATCCCCAGACTTGCTCATGACTTTAATGAGGTACCAGAAGGAATGGTTGGCTTGGGCTTTGAAGCAGGAGGAATCCATGAATAGAGGGGGAATCCTTGCGGACGAGATGGGAATGGGGAAGACTATCCAAGCCATTGCTCTTGTTCTTGCCAAACGGGCAACCCGTCAAACGGGTTGTGGGTCTAGTGGGCACTCACCCTCACCAAGTTCATCAACGGTGTTGCCCGAAATTAAATGCACTCTCGTTATTTGCCCTGTGGTTGCTGTGAAGCAGTGGGAGAAGGAGATTGCTCAGTTCACTCTGGAAGGGAGCACCAAGGTGCTGATCTATCATGGACCCAATAGAAAGAAGAGTCTCAATCAGTTCTCTGAGTATGATTTTGTCCTGACTACTTACTCCACTGTCGAGGCGGAGTACAGGAAAAATGTGATGCCACCCAAAGAAAAGTGTGTGTGGTGTGGGAAGTTGTATTATCCCAAGAATATGGCTCTCCACCTCCGGTATTTCTGTGGGCCTGATGCTGTTAAAACAGATAAGCAGTCTAAGCAATTGAGAAAAGAGGGGAAACATGGATTAAAATCTTCCAACTCGAAAACAAAATCCGCTGTCCTTGAAGCAGAGAACAGTGAATTTGAGGACAGTAAAAGGAAGGGAGCTGGCAAGAAGACTAAGAAGCCAGGGAAGCAAGGAAAGCAAGATAAGAAATCCGAGTTTAATTCTTCCAAGGGGAGTCCAGCAGATGTAGACCAATGCCCACCCACTAGGAACTCGATTTTGCATTCCATAAAGTGGGACCGCATTATTCTGGATGAGGCTCATTTTATAAAAGATAGACGCAGTAATACCGCAAAGGCTGTTCTTGCTTTAGAATCTTCGTATAAATGGGCTTTAAGTGGCACTCCTCTTCAGAATCGTGTTGGAGAACTTTACTCATTGGTCCGTTTCCTGCAAATAACTCCTTATTCATATTACTTCTGTAGGGATTGTGATTGCAAATCGCTAGATTATAGTTCCACAACGGAGTGTCCAAACTGTGATCATAAATCTATGAGGCATTTCTGCTGGTGGAACAAATTTGTGGCTACACCAATACAATGTTCTGGGAATGGCAATGAGGGAAGAAGAGCCATGATTTTGCTAAAAAACAAACTTTTGAAAAGCATAGTGCTAAGGCGCACTAAGAAAGGCAGGGCTGCAGATCTGCCTCTTCCGCCTAGAATTGTTACCCTGAGGCGGGACACCCTGGATATTAAAGAAGCAGATTGTTATGAATCATTATATAATGAAAGTCAGTTGCAATTTAATACATATGTTGATGCCGGAACCTTGTTGAATAATTATGCTCACATATTTGATCTCCTTACGCGATTACGACAGGCAGTTGATCATCCATACCTCGTGATCTATTCTAATACTGCAGCGCTAAAGAGTGGAAGCAATACTAATATTGGTGAAGAAGAGTGTGGCATTTGTCATGACCCAGCAGAAGACCCAGTGGTTACATCTTGTGAGCATGTCTTCTGTAAGGCTTGTTTGATGGATTACTCTGCAGCCGTGGGACAAGTCTCATGCCCCTCATGTTCAGAACCATTAACTGCTGATTTTACAACAAAGTTGAATCCAGGAGATCAGGGCCCTAAAACAGCCAAGGGTTTTAGAAGTTCAAGTATTCTAAACAAAATTTGTCTTGAAGATTTTCAGACAAGCACGAAAATTGATGCTTTGAGGGAAGAAATCAGATGCATGATTGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATTTGATTCATTACTCGCTACAGAAGTCTGGCATACATTGTGTTCAATTAGTGGGGAGTATGACAATGGCTGCGAGGGATGGTGCAATTCAGAGATTCACTGATGATCCGGATTGTAAGATCTTCCTTATGAGCTTGAAAGCTGGAGGTGTTGCACTCAATCTCACAGTTGCATCACATGTTTTCTTGATGGACCCCTGGTGGAACCCAGCTGTGGAGCGGCAGGCCCAAGATCGAATCCACCGAATAGGACAGTATAAACCAATCAGAATTGTAAGATTCATAATTGAGAATACGATTGAGGAGAGGATTCTGAAGCTGCAAGAGAAGAAGGAACTAGCATTTGAAGGGACTGTAGGTCGCTCTAAGGAGGCTCTAATAAAATTATCAGAAGCTGACTTGAGATTCTTATTTGCCACTTAA 2847 0.4355 MKRRSRRSVPKRAVKAKRRRTRGTRDPPDEEDYAPHSDSDTSGSDEGGASLHISDESIQRAEERRGRKGLGNNDKGKAVIESESNSDTNNSDDSNHVNYVMERNKRVSKKRRSEKEKPKGKGEKMVEESDKEELDTCIPDLNEACVDRLIGLKKKNNRKKKGRKREDGPPLLWEVWQEENERWIDANEARDINFDCQDEEMAETAEASPDLLMTLMRYQKEWLAWALKQEESMNRGGILADEMGMGKTIQAIALVLAKRATRQTGCGSSGHSPSPSSSTVLPEIKCTLVICPVVAVKQWEKEIAQFTLEGSTKVLIYHGPNRKKSLNQFSEYDFVLTTYSTVEAEYRKNVMPPKEKCVWCGKLYYPKNMALHLRYFCGPDAVKTDKQSKQLRKEGKHGLKSSNSKTKSAVLEAENSEFEDSKRKGAGKKTKKPGKQGKQDKKSEFNSSKGSPADVDQCPPTRNSILHSIKWDRIILDEAHFIKDRRSNTAKAVLALESSYKWALSGTPLQNRVGELYSLVRFLQITPYSYYFCRDCDCKSLDYSSTTECPNCDHKSMRHFCWWNKFVATPIQCSGNGNEGRRAMILLKNKLLKSIVLRRTKKGRAADLPLPPRIVTLRRDTLDIKEADCYESLYNESQLQFNTYVDAGTLLNNYAHIFDLLTRLRQAVDHPYLVIYSNTAALKSGSNTNIGEEECGICHDPAEDPVVTSCEHVFCKACLMDYSAAVGQVSCPSCSEPLTADFTTKLNPGDQGPKTAKGFRSSSILNKICLEDFQTSTKIDALREEIRCMIERDGSAKGIVFSQFTSFLDLIHYSLQKSGIHCVQLVGSMTMAARDGAIQRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFIIENTIEERILKLQEKKELAFEGTVGRSKEALIKLSEADLRFLFAT* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00457 948 Gene3D - 176 360 IPR038718 -
Eupl06g00457 948 Gene3D - 418 615 IPR038718 -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 387 401 - -
Eupl06g00457 948 ProSiteProfiles Zinc finger RING-type profile. 695 735 IPR001841 -
Eupl06g00457 948 CDD SF2_C_SNF 776 903 - -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 78 97 - -
Eupl06g00457 948 SMART ring_2 695 734 IPR001841 -
Eupl06g00457 948 Gene3D - 616 947 IPR027417 -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 387 461 - -
Eupl06g00457 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 579 IPR027417 -
Eupl06g00457 948 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 526 IPR014001 -
Eupl06g00457 948 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 57 947 - -
Eupl06g00457 948 SMART ultradead3 211 544 IPR014001 -
Eupl06g00457 948 CDD DEXDc_SHPRH-like 215 599 - -
Eupl06g00457 948 SMART helicmild6 809 892 IPR001650 -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 56 74 - -
Eupl06g00457 948 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 755 IPR013083 -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 22 39 - -
Eupl06g00457 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 470 946 IPR027417 -
Eupl06g00457 948 ProSitePatterns Zinc finger RING-type signature. 710 719 IPR017907 -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 1 130 - -
Eupl06g00457 948 Pfam RING-type zinc-finger 695 732 IPR027370 -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 412 426 - -
Eupl06g00457 948 SUPERFAMILY RING/U-box 688 739 - -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 1 21 - -
Eupl06g00457 948 MobiDBLite consensus disorder prediction 116 130 - -
Eupl06g00457 948 Pfam Helicase conserved C-terminal domain 779 892 IPR001650 -
Eupl06g00457 948 Pfam SNF2-related domain 229 674 IPR000330 GO:0005524|GO:0140658
Eupl06g00457 948 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 774 943 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00457 Eupl-Chr6 6753934 6778141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00457 142 948 RAD5 or RAD16-like Gene Family AT1G05120 62.362 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl06g00457 SNF2_N 2.1e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00457 K15083 - nnu:104588307 1245.34