Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00452 ATGGACTGGACCAGAGGCCACATCATCGGCCGTGGCTCATCAGCCACTGTCTCAGTCGCCACCGCTCGTCCATCCGGCGAGGCTTTCGCCGTTAAGTCGGTCGAGTTATCGCAATCGGAATTCTTGCAGAGAGAACAGAGAATTCTTTCTTCACTAAAGTGTCCTCAGATAGTTGGGTACATGGGTCACGATGTTACCTCTGAGAATGGTAAGCTTATGTATAATCTCTTCATGGAGTATGTCTCAGGTGGGACTCTTACTGATACAATTCAGAAACAAGGCGGTCGGCTCGACGAGTCCGTGATCCGATCCCATACTCACGCAATTCTACAAGGGCTAGAGTACCTTCACTTCAATCGCCTAGTGCATTGCGACATTAAGGGTCGTAACATTTTAATCGGATACGATGGCGCGAAGATTGCCGATTTGGGTTGCGCTAGAAGGGTCGACGAGGCCTCGGCGACAACGACGACGCCAATTGCTGGCACGCCTGTGTTTATGGCTCCTGAAGTCGCAATTGGGGATGAACAAGGCTTCCCTGCTGATGTGTGGGCTCTTGGATGTACAATTATCGAGATGGCTACAGGTCGTCCTCCTTGGGTAGATGTAGCTGACCCAGTCAGCGCTCTGTATCGAATTGCATTTTCTGGGGATGTGCCGGAATTCCCGAGCTTCCTGTCGGAGCAAGCCAAGGATTTCTTAAGCAATTGTTTAAGAAGAGATCCGAAAGAGCGATGGACAGCTAATCAGCTTCTTAAACATCCATTTCTTGATGACCCCAATTCTTATTCGAAGCAAATTCAAGATTCCACATCAAATTCTCCAACAAGTATTCTGGATCAATGCTTCTGGGGCTCACTGGAGGATTCAGAAACACCCATCGGTTCTTCGAATTCAGCCAGAGAAAGGCTTCGAGGATTATCGTCTCCAAGTACACCCAATTGGACATGGGATGAAAATTGGGTCACCATTAGAAGCAATAATTCAAGCCAGGACCATGATATGATCACAGCCGACGAACCCGCGACGACTAGTGGGTCAGTTTCAGTTTGGATTAGTCATGAAGAAAAGATGGAGCTGTGTGAAAGCTCTGTTCTTGCTGAGGATTTCTTGAATTACTCTGTAAATGATCTTAGTAGTAGTAGGTGTAGAAACAATTTAGGTAGTAGCAGAAGTTTTGTGAAGTCATGTAAATGTTCATGTAGCAATCTCAATTTTGTGACACAAAGAGAATGCATGTTTAATTCAATTCAAATTCTTTTGAAACCCTAA 1272 0.4599 MDWTRGHIIGRGSSATVSVATARPSGEAFAVKSVELSQSEFLQREQRILSSLKCPQIVGYMGHDVTSENGKLMYNLFMEYVSGGTLTDTIQKQGGRLDESVIRSHTHAILQGLEYLHFNRLVHCDIKGRNILIGYDGAKIADLGCARRVDEASATTTTPIAGTPVFMAPEVAIGDEQGFPADVWALGCTIIEMATGRPPWVDVADPVSALYRIAFSGDVPEFPSFLSEQAKDFLSNCLRRDPKERWTANQLLKHPFLDDPNSYSKQIQDSTSNSPTSILDQCFWGSLEDSETPIGSSNSARERLRGLSSPSTPNWTWDENWVTIRSNNSSQDHDMITADEPATTSGSVSVWISHEEKMELCESSVLAEDFLNYSVNDLSSSRCRNNLGSSRSFVKSCKCSCSNLNFVTQRECMFNSIQILLKP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00452 423 SMART serkin_6 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g00452 423 CDD STKc_MAPKKK 2 257 - -
Eupl06g00452 423 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Eupl06g00452 423 MobiDBLite consensus disorder prediction 290 309 - -
Eupl06g00452 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Eupl06g00452 423 Pfam Protein kinase domain 5 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g00452 423 Gene3D Transferase(Phosphotransferase) domain 1 88 293 - -
Eupl06g00452 423 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 337 - -
Eupl06g00452 423 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
Eupl06g00452 423 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Eupl06g00452 423 ProSiteProfiles Protein kinase domain profile. 3 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl06g00452 423 SUPERFAMILY Protein kinase-like (PK-like) 2 322 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00452 Eupl-Chr6 6662272 6663599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00452 2 352 MAP Kinase Kinase Kinase AT5G55090 48.413 9.61e-115 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Eupl06g00452 Pkinase 6.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00452 K20716 - nnu:104594042 520.39