Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00444 ATGGCCTCCCCAACTTCTCTCCTACTGTTCTCATGTCTACTAGCATGCTGGGCTTCCACATTGAAAGCTTCCTCGCTAGACAAAACGTATAACACCATATCAAGCCATGGCCCGAGGACCGGTCCCCGGTCCGGAAAGAAAATCGTGAACCAAATCGATAGTTGTTGGCGCTCCAATCCCAATTGGGCGTCCAATCGTCAAGCCTTAGCCGACTGTGCCATAGGCTTCGGTAAGGCAGCAATTGGAGGGAAATACGGGGCAATCTACGTCGTCACCGATTCATCTGATGACCCCGTCGACCCAAAGCCCGGCACACTTCGATATGGTGTCATCCAAACAAAGCCACTGTGGATAATTTTCAAAAGGGACATGGTCATTACACTAGAGAAGGAGCTTATAATGAACAGTTTCAAGACCATTGATGGACGAGGGGTGAAGGTGGAGATAGCGAATGGGCCTTGCATCACGATACAAGACGTGAGCCATGTCATAATACATGGGATCAGCATTCATGATTGTAAGCCTGGGAAGCCTGGTCTTGTTCGTAGCACCCCGATGCACGTTGGCCATCGGCTCGACTCTGACGGGGATGCCATCGACATATTTGGGTCTTCACATATCTGGATTGACCATTGTTTTCTAGCTCGATGCACCGATGGCCTCATTGATATCATCCATGCTTCCACTGCCATCACCATCTCGAACAACTTCTTCACCCAACATGATAAAGTAATGTTGTTAGGACACGAAGATAGTTTTTCTGCAGACAAGGTTATGAGAGTTTCGGTTGTCTTCAACCATTTCGGCCCCGGTTTAGTGCAAAGGATGCCCAGGGTTAGAAACGGATACGCCCATGTCGCGAATAATAGGTACGATGAGTGGTTGATGTATGCAATTGGTGGCAGTGCCAATCCCACGATACTAAGCGAAGGCAACTACTTCACCGCCTCGAACAATCCCGACGCCAAACAGGTTACTAAGCGAGAGGTTGATGATGGATGGAAGAATTGGAAATGGAGGTCATTTAATGATGTATTTGAAAATGGAGCTTACTTTGTTCCGTCTGGTTGGGGAACCTGTGCCCCTCTCTACTCTCTGTCTCAATCATTCAACGTTGCTCAAGGATCGAAGGTGCCTGCTCTAACATCAGACGCCGGTCCTCTGCGATGTGTGGCCGGAAAACCATGTTAA 1191 0.4861 MASPTSLLLFSCLLACWASTLKASSLDKTYNTISSHGPRTGPRSGKKIVNQIDSCWRSNPNWASNRQALADCAIGFGKAAIGGKYGAIYVVTDSSDDPVDPKPGTLRYGVIQTKPLWIIFKRDMVITLEKELIMNSFKTIDGRGVKVEIANGPCITIQDVSHVIIHGISIHDCKPGKPGLVRSTPMHVGHRLDSDGDAIDIFGSSHIWIDHCFLARCTDGLIDIIHASTAITISNNFFTQHDKVMLLGHEDSFSADKVMRVSVVFNHFGPGLVQRMPRVRNGYAHVANNRYDEWLMYAIGGSANPTILSEGNYFTASNNPDAKQVTKREVDDGWKNWKWRSFNDVFENGAYFVPSGWGTCAPLYSLSQSFNVAQGSKVPALTSDAGPLRCVAGKPC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00444 396 SMART amb_all 123 320 IPR002022 -
Eupl06g00444 396 SUPERFAMILY Pectin lyase-like 49 388 IPR011050 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 367 390 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 337 361 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Eupl06g00444 396 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Eupl06g00444 396 PANTHER PECTATE LYASE 18-RELATED 33 394 IPR045032 GO:0030570
Eupl06g00444 396 Pfam Pectate lyase 134 314 IPR002022 -
Eupl06g00444 396 Gene3D - 49 389 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00444 Eupl-Chr6 6577341 6578830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00444 7 396 Polysaccharide Lyase AT1G11920 67.857 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00444 K01728 - vvi:100245293 617.846