Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00398 ATGGAGGGTGGTCCTAGTAGTAATTCTTGTTTGATTGGTTTTGGAGATAACAGTAATGGTCTTTCTTCTATGATGATGATGCCTCTCATTACTTCTCCTTCTAAAGGAGAAGCGAATACCCTAATTCTTCCTCTTCCCTCCAACAACAGTCACAACCACAAGCAAAACAACAGCAGCCGCAATACAGGTTGTTATTTCATGGAGAACGACACCAACAACAACAACGACGACAGCAACAATTCGTTTATCAGGGCTAAGATCACGGCTCATCCTCACTACCCTCGTCTCTTGGCCGCTTACGTAAATTGTCAAAAGGTCGGAGCACCTCCTGAAGTGATCGCAAGGTTAGAGGAGGCATGCGCGTCCGAGGAGGCTATGGGCCGCACAGGAACGGGCTGCATCGGTGATGACCCGGCGCTCGATCAGTTCATGGAAGCCTACTGCGAGATGCTCACCAAGTACGAGCAAGAACTCACAAAACCCTTGAAAGAAGCTATGCTCTTCCTCGAGAGGATGGAGTACCAGTTCAAATCTCTCACTGTTGCTTCTTCAGATTCTGGTTGTGGTGATGCCATAGATCAAAATGGATCATCGGAGGAAGAGGTTGATGCAAGTGATAACTATGTAGATCCTCGAGCAGAAGATAGAGAACTAAAAGTTCAGCTTTTGCGCAAGTATAGTGGATATCTGGGCAGTCTCAAGCAGGAATTTTTAAAGAAGAGAAAGAAAGGGAAACTGCCCAAGGAAGCCCGGCAGCAGTTGCTGGACTGGTGGAGCAGACATTACAAATGGCCTTATCCATCGGAGTCGCAGAAGCTGGCGCTTGCGGAGTCCACAGGGCTGGACCAGAAGCAGATAAACAACTGGTTCATCAACCAAAGGAAGCGCCACTGGAAGCCTTCGGAAGAAATGCAGTTTATGGTGATGGATGCAACACAACCACACTACTACATGGACAACATCATGGGCAACCCTTTTCCTATGGATTGCACTCCCCGTGGTTATTAA 1008 0.4762 MEGGPSSNSCLIGFGDNSNGLSSMMMMPLITSPSKGEANTLILPLPSNNSHNHKQNNSSRNTGCYFMENDTNNNNDDSNNSFIRAKITAHPHYPRLLAAYVNCQKVGAPPEVIARLEEACASEEAMGRTGTGCIGDDPALDQFMEAYCEMLTKYEQELTKPLKEAMLFLERMEYQFKSLTVASSDSGCGDAIDQNGSSEEEVDASDNYVDPRAEDRELKVQLLRKYSGYLGSLKQEFLKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEEMQFMVMDATQPHYYMDNIMGNPFPMDCTPRGY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00398 335 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Eupl06g00398 335 ProSiteProfiles ELK domain profile. 217 237 IPR005539 GO:0003677
Eupl06g00398 335 SMART HOX_1 239 304 IPR001356 GO:0003677
Eupl06g00398 335 Pfam KNOX2 domain 133 180 IPR005541 GO:0003677|GO:0005634
Eupl06g00398 335 Pfam ELK domain 217 238 IPR005539 GO:0003677
Eupl06g00398 335 Pfam Homeobox KN domain 257 296 IPR008422 GO:0003677|GO:0006355
Eupl06g00398 335 ProSiteProfiles 'Homeobox' domain profile. 237 300 IPR001356 GO:0003677
Eupl06g00398 335 SMART KNOX1_2 81 125 IPR005540 GO:0003677|GO:0005634
Eupl06g00398 335 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 307 - -
Eupl06g00398 335 ProSitePatterns 'Homeobox' domain signature. 275 298 IPR017970 GO:0000981|GO:0006355
Eupl06g00398 335 SMART ELK_2 217 238 IPR005539 GO:0003677
Eupl06g00398 335 FunFam Homeobox protein knotted-1-like 2 242 304 - -
Eupl06g00398 335 CDD homeodomain 249 301 IPR001356 GO:0003677
Eupl06g00398 335 SUPERFAMILY Homeodomain-like 239 312 IPR009057 -
Eupl06g00398 335 Gene3D - 242 304 - -
Eupl06g00398 335 Pfam KNOX1 domain 83 122 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00398 Eupl-Chr6 5968284 5977527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00398 83 329 Homeobox Transcription Factor Family AT1G62360 78.431 1.94e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Eupl06g00398 KNOX2 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00398 - - nnu:104588046 554.673