Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00397 ATGGCAGCTGTGAAGCGACTTCTCAAATCAGGCCAGGCATGGCGAGCGATCAACTCTCTCAAAACTCCAACGTCTCCTTCTTTTCCTGCAACTCGAGACCTTCAACACAGATTACGCCACCGGTCTTTTGAACACCACATGCATCAGAATACATCCAAAAAGCTGAGTTCAAAATCAATATGTGAATTTCCTGGATTATTTTCTATACTGCCAGCCATCTTAGCTGGCGTGTTTGGAGTGGGAATGCTAGAAATGTCTCATGCAGATGCCAATGAGACAGACTCTCAAACTCCTTTGTCACCAGAATCTCCTCCATCAGGCTATGCCGACATGGAGAAAATTGTTAGACAAGAACGACATCGGTTGGAAGAACTGCTTCGAAGTAAAGGAATGCAACATGGCTCTTATCCTCGCTTTACTGTTGCTTTTAAGGGCCAAAAGGTCACGATCAAATTCCAAATTTCTCGAACATGTGAAGTACCACACCTGATTGTGGACCTTGTTTCACGTCTTGGTCTGAAGGCTGAAGAGCGTGGTGGCGGTTCAGATATGATATTGCGTGCTTGGGACAGTGCAGTTGCTTGGCAACTGACACTTAATCACCCAACAAAGCAGAAGGAAGTTCAAGGAGACAGGGCAGTTTCAGAAGATAAGGATGAACATGAGGGAGATTTATGCATCCTTATATTTCAGTCGCTCATCAGTTTTGACAATGCAGAAATTGAGTTCATAAAGCAGGGGAGCTTTACTCCTAAGGAGCTTGATGCTTTGGTGTCTGCACTAAAATTAGCCGCTGGAAAGGTGAGCACAAAGAGAGCCTTAGAAAGAAGGCCAAAGGGATATCCAGAGAGACGGGAGAACAAGCCAGATGCTGCACGAATACCTTCTGCTGAAAAATCAGTAGCTACTCTAGAAGCCATGGGAGTGAGAGTTTTTGGACTTGATGCACCCCATGCAGTTTCCTTGAATGATGAGATATCATGGGACAACATTGCAGGGTATGATCAACAAAAACGTGAAATAGAGGACACCATACTATTGGCTCTACATAGTCCTGAAGTATATGATGATATTGCTCGTGGTACTCGGCGTAAGTTTGAGTCTAACAGACCTCGAGCCGTGCTTTTTGAAGGTCCACCAGGGACAGGGAAGACATCTTGTGCTCGGGTAATTGCAAATCAAGCGGGTGTCCCATTGTTGTATGTGCCACTTGAGGTTGTCATGTCAAAGTATTATGGTGAAAGTGAACGATTGTTCGGGACAGTGTTCTCGCTTGCCAACGAGCTCCCTGATGGTGCGATCATTTTCCTAGATGAGGTTGATTCTTTTGCTGCTGCCCGTGATGAAGGAATGCATGAAGCTACACGTAGGATTTTATCAGTGTTGTTGCGACAGATTGATGGATTTGAGCAGGAGAAGAGTGTGGTGGTAATTGCCGCAACAAATAGAAAGGAAGACCTTGACCCTGCTCTTATCAGTCGCTTCAACTCGATGATTACTTTTGGCCTACCTGATCTACAGAACCGTCAGGAAATAGCAGCACAATATGCAAAGCACTTGAAAAAATCTGAGTTAATTGAATTTGCTGCAGTTACAGAAGAAATGTCTGGAAGGGATATCAAGGACGTGTGTCAACAAGCAGAGTGGCACTGGGCATCAAAGATAATTCGAGGCCAAGCACCTAGTGATGCAGAAGAGGGGCGTCTTCCACCACTCCAAGAATATATCGAGAGTGCTTTGAACCGGCGGAAGGCTCTACTCAGTATTTCAGACAAGAAAAGCCAAAACCCTAATCCTCGTGGAAAAAAGAGCCCCATGGAATTTCTTTGA 1830 0.4503 MAAVKRLLKSGQAWRAINSLKTPTSPSFPATRDLQHRLRHRSFEHHMHQNTSKKLSSKSICEFPGLFSILPAILAGVFGVGMLEMSHADANETDSQTPLSPESPPSGYADMEKIVRQERHRLEELLRSKGMQHGSYPRFTVAFKGQKVTIKFQISRTCEVPHLIVDLVSRLGLKAEERGGGSDMILRAWDSAVAWQLTLNHPTKQKEVQGDRAVSEDKDEHEGDLCILIFQSLISFDNAEIEFIKQGSFTPKELDALVSALKLAAGKVSTKRALERRPKGYPERRENKPDAARIPSAEKSVATLEAMGVRVFGLDAPHAVSLNDEISWDNIAGYDQQKREIEDTILLALHSPEVYDDIARGTRRKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSKYYGESERLFGTVFSLANELPDGAIIFLDEVDSFAAARDEGMHEATRRILSVLLRQIDGFEQEKSVVVIAATNRKEDLDPALISRFNSMITFGLPDLQNRQEIAAQYAKHLKKSELIEFAAVTEEMSGRDIKDVCQQAEWHWASKIIRGQAPSDAEEGRLPPLQEYIESALNRRKALLSISDKKSQNPNPRGKKSPMEFL* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00397 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 590 IPR027417 -
Eupl06g00397 609 Gene3D - 324 585 IPR027417 -
Eupl06g00397 609 SMART AAA_5 370 505 IPR003593 GO:0016887
Eupl06g00397 609 MobiDBLite consensus disorder prediction 587 609 - -
Eupl06g00397 609 Pfam ATPase family associated with various cellular activities (AAA) 374 502 IPR003959 GO:0005524|GO:0016887
Eupl06g00397 609 Coils Coil 108 128 - -
Eupl06g00397 609 CDD RecA-like_protease 359 501 - -
Eupl06g00397 609 ProSitePatterns AAA-protein family signature. 475 494 IPR003960 GO:0005524|GO:0016887
Eupl06g00397 609 Gene3D - 504 581 - -
Eupl06g00397 609 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 306 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00397 Eupl-Chr6 5940127 5960483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00397 370 549 Calmodulin-binding Proteins AT3G56690 37.234 1.60e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00397 - - nnu:104594092 880.167