LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g00374	ATGGATGGTGCAGAGAGAGAGAGTAGGTGGAGGAATCTGAAAGAACGGCTGGGATTTAAAGGGGTGGGGTGTTGTGGTGGGGTCACCTGGGGATTCAGGGCTTCTTCGAATATGAGCGTAAGAGAAGAAGACGAAGACGAACAAGACTTGCAAGAAGAGACATTGGGTGTGGTTCAGATTGGGGCGGAGAACGGCGTGGATCCTGAGTGTGTGGGTCAGGTTCCGGCAGCGTCGGGGATGAACTTGGCGACAGCATTGGCCGCTGAGCGTCATTTACGGGCGGCACAAAATGGGGACACCGCCGGTACTACTTCGACAGCAACTACAGGTACTGCGCCTTGTACTCCGTCAAGGGTATCGCTAATGAGATTGCTTGAAGAAGGGGACGGTGTTGATGGAGAGGGAGAGAAAGAAAGAGAAGGAGCAGGAGGAGAAGGGAGTGATAGCGCGTGCTGCGTGTGCATGGGGAGAAAGAAAGGCGCAGCTTTCATTCCATGTGGACACACTTTTTGCCGGGTGTGTTCGAGGGAGCTGTGGTTGAATCGAGGGTCTTGTCCCCTCTGCAACCGTTCGATTCTCGAGATTCTTGACATCTTCTAG	600	0.5367	MDGAERESRWRNLKERLGFKGVGCCGGVTWGFRASSNMSVREEDEDEQDLQEETLGVVQIGAENGVDPECVGQVPAASGMNLATALAAERHLRAAQNGDTAGTTSTATTGTAPCTPSRVSLMRLLEEGDGVDGEGEKEREGAGGEGSDSACCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF*	200

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g00374	199	MobiDBLite	consensus disorder prediction	127	144	-	-
	Eupl06g00374	199	Pfam	Zinc finger, C3HC4 type (RING finger)	148	193	-	-
	Eupl06g00374	199	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	131	199	IPR013083	-
	Eupl06g00374	199	PANTHER	OS01G0917900 PROTEIN	6	199	-	-
	Eupl06g00374	199	SMART	ring_2	151	188	IPR001841	-
	Eupl06g00374	199	ProSiteProfiles	Zinc finger RING-type profile.	151	189	IPR001841	-
	Eupl06g00374	199	CDD	RING-HC	151	188	-	-
	Eupl06g00374	199	SUPERFAMILY	RING/U-box	147	196	-	-
	Eupl06g00374	199	MobiDBLite	consensus disorder prediction	127	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g00374	Eupl-Chr6	5675953	5677541	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g00374	1	199	C3H Transcription Factor Family	AT4G22250	52.153	3.75e-56	175

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g00374	-		-	nnu:104594111	234.187