Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00372 ATGGGGAAATCAGGAGGGAGGAGAAAGAAGGGTGGTAGTGGTAGTGGTAGTGGTAGTGGTAATGGGAACCCTGGTTCTGGAGATCTCCCAATCTCTGCTCCTAATGGCGTCGTTGATTTGGATTCCTCAATCTTCTTGAAAAGAGCCCATGAACTCAAAGAAGAAGGAAATAAGCGTTTCCAGTCCAAAGATTTTGTGGGTGCTCTTGAACAGTACGACCTTGCTCTTCGTCTCACCCCCAAGACCCACCCAGACCGTGCCGTCTTCCATAGCAACCGTGCTGCTTGTCTCATGCAGATGAAGCCTGTCGACTATGAAACCGTTATCGCTGAGTGCTCTCTCGCACTTCAGGTCCAGCCCCGGTTCAGCCGGGCGCTCCTCCGCCGCGCCCGCGCCTACGAGGCTCTTGCCAAGTATGAAATGGCTTTGCAGGATGTGCAAGCCCTGTTGCTTGCTGATCCTAACCATCGGGACGCTTTGGAGTTTGCCCGTCGCTTGCGGATTGCGCTTGGCCCTCGCCAAGACGCCCAGCAGGACCTCCAGAGCCGCCCTTCCCCGGCTGCTCTTGGGGCTTCTGCTGTTCGTGGGGCCCCAGTTTCCGGGCTGGGCCCTTGCTTGCCTGCCCGCCCGGTACCTAAGAAGTTCTCACCTTCAATGGCAGGTGTTGGCGCTGGGATGGTTGTGTCGCCTAATAATAAGCCCGAGAAGATTCAACAGCTTGAAGATTGTCCCGAGCTCAAAACCCAGCAGCAGAAATCTGTTTCTTCTTTGGAACCCATTTCTTATCCAATTAAGGATAGTTCCAAGGATCAATCTTCTTTGTCATCATTGTCATTGCCCGTTCGTGGGCAGGCTTCGGATTTTGCTGCTACTCGATGGAGGCCATTGAAACTTGTTTACGATCATGACATTAGGCTTGCACAGTTGCCCGCGTATTGCAGTTTTAGAGTTTTGAGGGAGATTGTGAGCAAACGGTTTCCGTCATCCAAATCGGTTTTGATCAAGTATAAGGACAATGATGGTGATCTGGTGACCATTACCTGTACTAGTGAACTCAGATTGGCAGAGTCCTGTGTGGACAGTGTTGCACTGAAGGAGCCTGAAACGGAGAAAATTGACTTGCTTGGGGTGCTGAGGTTGCATATTGTCGAGGTGAGCCCTGAGCAGGAGCCACCTTTGGTGGAAGAAGAGGAGGAGAAGCAAGTGGAGGATGATGGGATCAAAGGTGATGAGAATGGGTCTCGTTCTTCTACTGGGGATTCTGTATTGGAAACTGTTGATACTGAAATTGGTAAGACTGAGGAAGAAGCTCCAAAGGAGAAGGTTGGGACTGGGGATGATAGTGAGTCCAAGGAAGTGGAGATAGATGATTGGCTATTTGAGTTTGCTCAGCTCTTCCGGACCCATGTGGGGATTGACCCGGATGCCCATATTGATCTACACGAGATTGGGATGGAGCTCTGTTCCGAGGCTCTTGAGGAGATAGTGACAAGCGAAGATGCTCAAAAGCTCTTTGACATGGCTGCTTCTAAGTTCCAGGAGGTTGCTGCACTGGCTTTCTTCAATTGGGGGAATGTTCACATGTGTGCAGCAAGGAAACGGATACCGTTGGATGACTCTGCATCAAAGGAGGTGATGACAGCCCAGCTTCAAGCGGCTTATGACTGGGTCAAGGATAAGTATTCTCTGGCTGGGGAGAAGTATGAGGAGGCACTAAGGATCAAGCCAGACTTTTACGAGGGTTTGCTTGCATTGGGGCAACAACATTTTGAGACTGCAAAGCTTCAGTGGTCCTTTGTTCTAGCGAATAAAATCGACCTGGCAAGTTGGGATCCTACAGAGACGATTAAGCTCTTCGATAGTGCGGAAGAAAAGATGAAGGCTGCGACTGCGATGTGGGAGAAGCTGGAGGAGCAGAGGGCTAATGAACTCAAGGACCCGAGTTCCAAGAAGAAAGAGGATTTGTTGAAAAGGAAGAAGAAACAAGGAGCAAGTACAGATGGTGGGCCCTCTGGAAATGGCGATTTGGGGGATGTTTCACCTGATGAAGTGGCGGAGCAAGCGGCTGTGATGAGATCTCAGATACATCTCTTCTGGGGTAATATGCTTTTTGAGCGTTCCCAAATTGAATTCAAACTAAGTTTGGATGGTTGGAAGAAGAATCTGGATGCAGCTGTTGAAAGGTTTAAGCATGCTGGAGCTTCTGAAGTGGACATTTCTGTGGTTCTAAAGAACCATTCCTCCAATGGGGATGGGGTGGAAGGTGAGGAGAAAGAGGTTACAAATCCGAGCACCAATGTTGCTGTTAAAGCAAATGTTAAGGATGAGGGTAAGAATGCATTAGAAAGGTGA 2352 0.4966 MGKSGGRRKKGGSGSGSGSGNGNPGSGDLPISAPNGVVDLDSSIFLKRAHELKEEGNKRFQSKDFVGALEQYDLALRLTPKTHPDRAVFHSNRAACLMQMKPVDYETVIAECSLALQVQPRFSRALLRRARAYEALAKYEMALQDVQALLLADPNHRDALEFARRLRIALGPRQDAQQDLQSRPSPAALGASAVRGAPVSGLGPCLPARPVPKKFSPSMAGVGAGMVVSPNNKPEKIQQLEDCPELKTQQQKSVSSLEPISYPIKDSSKDQSSLSSLSLPVRGQASDFAATRWRPLKLVYDHDIRLAQLPAYCSFRVLREIVSKRFPSSKSVLIKYKDNDGDLVTITCTSELRLAESCVDSVALKEPETEKIDLLGVLRLHIVEVSPEQEPPLVEEEEEKQVEDDGIKGDENGSRSSTGDSVLETVDTEIGKTEEEAPKEKVGTGDDSESKEVEIDDWLFEFAQLFRTHVGIDPDAHIDLHEIGMELCSEALEEIVTSEDAQKLFDMAASKFQEVAALAFFNWGNVHMCAARKRIPLDDSASKEVMTAQLQAAYDWVKDKYSLAGEKYEEALRIKPDFYEGLLALGQQHFETAKLQWSFVLANKIDLASWDPTETIKLFDSAEEKMKAATAMWEKLEEQRANELKDPSSKKKEDLLKRKKKQGASTDGGPSGNGDLGDVSPDEVAEQAAVMRSQIHLFWGNMLFERSQIEFKLSLDGWKKNLDAAVERFKHAGASEVDISVVLKNHSSNGDGVEGEEKEVTNPSTNVAVKANVKDEGKNALER* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00372 783 SMART tpr_5 49 82 IPR019734 GO:0005515
Eupl06g00372 783 SMART tpr_5 123 156 IPR019734 GO:0005515
Eupl06g00372 783 SMART tpr_5 87 122 IPR019734 GO:0005515
Eupl06g00372 783 MobiDBLite consensus disorder prediction 638 680 - -
Eupl06g00372 783 MobiDBLite consensus disorder prediction 248 273 - -
Eupl06g00372 783 Gene3D Tetratricopeptide repeat domain 46 169 IPR011990 GO:0005515
Eupl06g00372 783 SUPERFAMILY CAD & PB1 domains 293 364 - -
Eupl06g00372 783 MobiDBLite consensus disorder prediction 173 192 - -
Eupl06g00372 783 MobiDBLite consensus disorder prediction 14 28 - -
Eupl06g00372 783 SUPERFAMILY TPR-like 46 180 IPR011990 GO:0005515
Eupl06g00372 783 MobiDBLite consensus disorder prediction 638 664 - -
Eupl06g00372 783 CDD PB1 296 382 - -
Eupl06g00372 783 Gene3D - 295 365 - -
Eupl06g00372 783 PANTHER PROTEIN CLMP1 1 765 IPR044517 -
Eupl06g00372 783 MobiDBLite consensus disorder prediction 1 33 - -
Eupl06g00372 783 Coils Coil 619 639 - -
Eupl06g00372 783 ProSiteProfiles PB1 domain profile. 293 385 IPR000270 GO:0005515
Eupl06g00372 783 SMART PB1_new 293 385 IPR000270 GO:0005515
Eupl06g00372 783 Pfam PB1 domain 293 383 IPR000270 GO:0005515
Eupl06g00372 783 MobiDBLite consensus disorder prediction 427 449 - -
Eupl06g00372 783 ProSiteProfiles TPR repeat profile. 123 156 IPR019734 GO:0005515
Eupl06g00372 783 MobiDBLite consensus disorder prediction 388 450 - -
Eupl06g00372 783 MobiDBLite consensus disorder prediction 390 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00372 Eupl-Chr6 5644519 5646870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00372 39 167 Calmodulin-binding Proteins AT3G25230 27.143 5.01e-09 57.8