Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00368 ATGCCAGATAGTTGGCAGGTTCTGAACAATGCTGTTTCCACTTCTTCTAATGCCTCCGCCGATAACCTTGAAGAAGCCATGCGGCGCTTGAAAATTCAGACCCAGGAGAGTCCTTATCCGGATCGTCCGGGTGAACCTGATTGTATCTATTATTTAAGGACTGGGTTGTGTGGTTATGGAAACAATTGTCGCTTTAACCATCCTGCTTATGCCGGGCAGGCTGCTCAGTACAGAGGAGAACTTCCTGAAAGAGTTGGACAACCTGATTGCCAGTATTTCCTCAAGACAGGGACTTGCAAATTTGGAGCGACGTGTAAATATCATCATCCACGAGACAGGCATGATGCACGACAGGTCCCATTGAACATTTTGCGTCTACCTATGCGTCAGGAAGAGAAATCTTGTCCATATTACATGCGAACTGGATCCTGTAAGTTTGGAACTGCCTGCAAGTTCCATCATCCCCAGCCTGCTACACTTGGAGCTGTATTACCTGTTAATGGATCCGCTGCCTACGGATCTATGGGTTCATCAGCAGCACCTCCATCAGGTCCACCCTATGTAGGTGGACTTCCAGCATGGTCTTTACCTAGAGCACCATCCATATCTGGTCCGCCCATGCAAGGTCCCCAGGCCTACATGCCTGTTGTTCTTTCTCCTTCCCAAGGCATCATACCCACACAACAGGGGTGGAATACTTATATGGGAACCATGAGCCCCATATCATCTACCACTGTTCTTGGATCCAATCTTGTCTACAGCTCTAAGCATCAGAGTGAATCAGGCTCAAGCGGCCAGATGCACATATTATCTACATCTGTCTTGCATTTCCCCGAGAGACCCGAACAGCCAGAATGTCAGTATTACATGAAGACTGGAAGTTGCAAATTTGGATCCTCTTGCAAGTACCATCATCCAAAAGAGAGGATTGCTCCATTGGCTACAAGTCCTCTGGGCCCATATGGACTACCCCTGAGACCTGGCCAAGCCATATGCACATTCTATAGTATGTATGGAATCTGCAAGTATGGTTCAACTTGCAAATTTGATCATCCCTTGGCTGGATTCTATAACTATGGCATGAGCATACCCACTTTATCCATTCCGGACCCGTCTATCTTCCCCTACCAGAGAAACTCGCCAATGGCCTGGTCATCCGAAACTTCACCCTCTAAATCGTCGAAGTTGCCTGATCGGACAAAACCCGAGACGACAAGTACCAAGCATCAGAACCTGGATACAAAAGCTCCTGAAGAACCACTGCAGCAAGCTACCTCTCCACGTCACACCACACCAACTTCGGAACCCCCACACAATCAATCTGATTAA 1329 0.4786 MPDSWQVLNNAVSTSSNASADNLEEAMRRLKIQTQESPYPDRPGEPDCIYYLRTGLCGYGNNCRFNHPAYAGQAAQYRGELPERVGQPDCQYFLKTGTCKFGATCKYHHPRDRHDARQVPLNILRLPMRQEEKSCPYYMRTGSCKFGTACKFHHPQPATLGAVLPVNGSAAYGSMGSSAAPPSGPPYVGGLPAWSLPRAPSISGPPMQGPQAYMPVVLSPSQGIIPTQQGWNTYMGTMSPISSTTVLGSNLVYSSKHQSESGSSGQMHILSTSVLHFPERPEQPECQYYMKTGSCKFGSSCKYHHPKERIAPLATSPLGPYGLPLRPGQAICTFYSMYGICKYGSTCKFDHPLAGFYNYGMSIPTLSIPDPSIFPYQRNSPMAWSSETSPSKSSKLPDRTKPETTSTKHQNLDTKAPEEPLQQATSPRHTTPTSEPPHNQSD* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00368 442 Gene3D - 32 112 - -
Eupl06g00368 442 MobiDBLite consensus disorder prediction 379 393 - -
Eupl06g00368 442 SUPERFAMILY CCCH zinc finger 127 157 IPR036855 GO:0046872
Eupl06g00368 442 ProSiteProfiles Zinc finger C3H1-type profile. 280 308 IPR000571 GO:0046872
Eupl06g00368 442 MobiDBLite consensus disorder prediction 379 442 - -
Eupl06g00368 442 SUPERFAMILY CCCH zinc finger 47 69 IPR036855 GO:0046872
Eupl06g00368 442 MobiDBLite consensus disorder prediction 416 442 - -
Eupl06g00368 442 Gene3D - 279 359 - -
Eupl06g00368 442 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
Eupl06g00368 442 SUPERFAMILY CCCH zinc finger 325 352 IPR036855 GO:0046872
Eupl06g00368 442 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Eupl06g00368 442 ProSiteProfiles Zinc finger C3H1-type profile. 326 354 IPR000571 GO:0046872
Eupl06g00368 442 Gene3D - 113 167 - -
Eupl06g00368 442 SUPERFAMILY CCCH zinc finger 281 309 IPR036855 GO:0046872
Eupl06g00368 442 MobiDBLite consensus disorder prediction 394 415 - -
Eupl06g00368 442 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Eupl06g00368 442 SMART c3hfinal6 280 307 IPR000571 GO:0046872
Eupl06g00368 442 SMART c3hfinal6 84 111 IPR000571 GO:0046872
Eupl06g00368 442 SMART c3hfinal6 326 353 IPR000571 GO:0046872
Eupl06g00368 442 SMART c3hfinal6 131 156 IPR000571 GO:0046872
Eupl06g00368 442 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Eupl06g00368 442 SUPERFAMILY CCCH zinc finger 88 114 IPR036855 GO:0046872
Eupl06g00368 442 PANTHER PROTEIN PHOSPHATASE RELATED 27 392 - -
Eupl06g00368 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 68 IPR000571 GO:0046872
Eupl06g00368 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Eupl06g00368 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 328 352 IPR000571 GO:0046872
Eupl06g00368 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 307 IPR000571 GO:0046872
Eupl06g00368 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00368 Eupl-Chr6 5580105 5586855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00368 1 427 C3H Transcription Factor Family AT1G04990 44.444 2.93e-108 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl06g00368 zf-CCCH 4.8e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00368 - - nnu:104594120 732.25