Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00299 ATGTCTCACAGAGAAACCACGATCGATTGCGTCCATCAACGCCTCGATCGCATCTCATCCAAGCGAAAGTTAGACGATTATGGACCCGGCGACGATGACTTCTACGATTTAGTTTCCGTAAGGATGAAGAAAGATGAAGCTGATGCCGTCAATTCCTCTGCTAAGTTAGGTCACAGCAACAACGAACAAGAACCCGATGTCGGAGCTAGGGTTTCCGAGGCTCGATCGGTCCCATGCAGTAGTAGTTCGAGCGGGGGAGATATCAGACGGTCGTCGAAATCGTTGCATTTCTTTGTGCGGATGATATCTGGGGGTAATACGATTGTCATACATGCAAATTCAGAGGATTCGGTGGAATCTGTTCACGAACAGATTCGAAGGATGACTGGCATTCCGATCATCGAACAACGTTTAATTTATAGAGGAAAACAGCTCCAGTGGGAGCAATCGCTCGCTGAGTGTTCGATCCAGAACGACGCGGGACTTCAATTGGTCGGGCGGATGAGGAGTACAGAGTATCCACGGACTTGGCAGGTCATCAACGATTTAGTATCCTCTATATGTCGCCTCTGTAGAGGGGATTCTCAACGTTTGTTGAGAAACGTTAAGTCCCGCGTTAAGGAGTTCTTGAGAATGACTCCGAAGGACGATAATGAAATGAGTTCGGGGCATCTTCAGATATTTAAGTCTGCTGGTGCGCCAACTGCTTTAGTTATGTTGTTCCTCTCGCCCATCAAAGGTAACAAGGAGTGCGCGGAAGAGTCAATTCGGCTCTTTCTCAATCCAAACATCGACTCCTTACCGAAATCGATACAAAGTCAGTGTGCTTTGATAGTGTTAGAGTTCTGTAAGTTGCTTAGTAGAACTGCTCATGATGATCCACTATACATCTCATGCCGAAATACTCTTGGATCACTGATGGAAACTATCGGGGTTGCACATGGATCGAGATATTTCGATAACGCAAAGGCATCAGTTGTAATCCGGGAATTCTTCCCATTTGTATATGAGCTGGCGGGTAGGCTGTCTATGAGTTTGGACTCAAGTTTGAACTCATCCGCATGCACAGGAACATCGTTAGGTGATGTCCGTGATTTTACCGCGTTCTTGCTCCCCTTGTGTAGGGCAATTGAGGACCAGGTGGGTGGGGAGGGTCACATCCCTATCCGTTTGCATGATAAACGGCCGTGTTTTGTGGTTGAGATTGGATCACTCCATGTTATTTTCTTAGAGTTGCTGGAAAAAATTGATCAATGCCTGAAGAAAATGGAGGAGATTTTGGTTGCAAAAGGTGCAGCGGAAAGTGAAATCCATCGGCTAGGGTGGTCTCAATATCTTGGTATTTTGAAGGAATTGAGTAGCCTTTCAAAACTTTATGAAGGTGCTGGAGAAAAACTTTGCTCCGTTATGAGCTCGAGGCGGTTTTCATTGAATGCTCTTGTTAGGTATGCAAAACGGAGTGATGATCATCGCTGGCTTCTTGAGCATAAGGACGTAACAGATTTTGAATCTAGAAGGCATTTGGTGATGATGATGTTCCCTGAGGTAAAAGATGAGTATGACGAGCTGCATGAAATGCTCATTGACAGGTCACAGTTATTGGCTGAATCATTTGAGTATATAGCTCATGCGGATCCTGAAGCATTGCATGGTGGCCTTTTCATGGAGTTCAAAAATGAGGAAGCAACAGGTCCTGGTGTTTTGCGGGAGTGGTTTTGCTTGGTATGCCAAGCAATATTCAATCCACAGAATGCCCTTTTTTTAGCATGCCCAAATGACTGTCGACGGTTCTTTCCAAATCCAGCGTCTAATGTGGATCCCCTTCACCTTGACTATTTTGGCTTCTGCGGTCGAGTGATTGCATTAGCCTTGATGCATAAAGTGCAAGTAGGAATTGTATTTGATCGCGTGTTTTTCTTGCAACTAGCTGGAAAGTTTGTTTCTTTGGAAGATGTGCGGGATGCAGATCCATGCTTGTATATGAGCTGCAAAAGGATTTTGGAGATGGATGCTGATTATTTGGATTCAGATGCTCTGGGTCTGACATTTGTCAGAGAAATCGAAGAATTAGGTTCCAGGAAAGTTGTGGAGCTCTGCCCAGGAGGGAAGGACCTCGTTGTGAGTAGCAAGAATAGAGAGGAATATGTGAACCTTCTTATTCAACATCGCTTCGTCACATCCGTCTCCGAACAGGTAGCCCATTTTGCTCAAGGTTTTGCTGATATTCTTAGTAATTCAAAGCTCCAGAAATTCTTTTTTCAAAGTTTAGAGCTCGAAGATCTTGATCGTATGCTGCATGGAAGCGATGGAACTATTTGTGTAAATGACTGGAAAGCACACACTGAGTACAATGGCTACAAAGAAACCGATCGTCAAATCTGCTGGTTTTGGAAGATTGTTGAGGGCATGCCTGTGGAACAGCGAAGGGTACTTCTCTTCTTTTGGACCTCAGTGAAGTACCTACCGATAGAGGGTTTTGGTGGTTTGCAGTCTCGCCTGTACATCTTCAAGGCATCAGACTCCCATGATCGCCTACCGTCCTCTCACACATGCTTCTACCGGCTGTGCCTCCCACCTTACCCATCTCTAGCCGTCATGCGGGATTGTCTTCAAATCATCACCCAAGAACACGTGAGCTGCAGCTTTGGTATTTGGTGA 2658 0.4541 MSHRETTIDCVHQRLDRISSKRKLDDYGPGDDDFYDLVSVRMKKDEADAVNSSAKLGHSNNEQEPDVGARVSEARSVPCSSSSSGGDIRRSSKSLHFFVRMISGGNTIVIHANSEDSVESVHEQIRRMTGIPIIEQRLIYRGKQLQWEQSLAECSIQNDAGLQLVGRMRSTEYPRTWQVINDLVSSICRLCRGDSQRLLRNVKSRVKEFLRMTPKDDNEMSSGHLQIFKSAGAPTALVMLFLSPIKGNKECAEESIRLFLNPNIDSLPKSIQSQCALIVLEFCKLLSRTAHDDPLYISCRNTLGSLMETIGVAHGSRYFDNAKASVVIREFFPFVYELAGRLSMSLDSSLNSSACTGTSLGDVRDFTAFLLPLCRAIEDQVGGEGHIPIRLHDKRPCFVVEIGSLHVIFLELLEKIDQCLKKMEEILVAKGAAESEIHRLGWSQYLGILKELSSLSKLYEGAGEKLCSVMSSRRFSLNALVRYAKRSDDHRWLLEHKDVTDFESRRHLVMMMFPEVKDEYDELHEMLIDRSQLLAESFEYIAHADPEALHGGLFMEFKNEEATGPGVLREWFCLVCQAIFNPQNALFLACPNDCRRFFPNPASNVDPLHLDYFGFCGRVIALALMHKVQVGIVFDRVFFLQLAGKFVSLEDVRDADPCLYMSCKRILEMDADYLDSDALGLTFVREIEELGSRKVVELCPGGKDLVVSSKNREEYVNLLIQHRFVTSVSEQVAHFAQGFADILSNSKLQKFFFQSLELEDLDRMLHGSDGTICVNDWKAHTEYNGYKETDRQICWFWKIVEGMPVEQRRVLLFFWTSVKYLPIEGFGGLQSRLYIFKASDSHDRLPSSHTCFYRLCLPPYPSLAVMRDCLQIITQEHVSCSFGIW* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00299 885 Gene3D Hect, E3 ligase catalytic domain 645 727 - -
Eupl06g00299 885 SMART hect_3 543 883 IPR000569 GO:0004842
Eupl06g00299 885 SUPERFAMILY Ubiquitin-like 97 182 IPR029071 -
Eupl06g00299 885 Pfam HECT-domain (ubiquitin-transferase) 574 877 IPR000569 GO:0004842
Eupl06g00299 885 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 88 183 - -
Eupl06g00299 885 ProSiteProfiles HECT domain profile. 545 885 IPR000569 GO:0004842
Eupl06g00299 885 SMART ubq_7 95 167 IPR000626 GO:0005515
Eupl06g00299 885 MobiDBLite consensus disorder prediction 49 89 - -
Eupl06g00299 885 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 645 727 - -
Eupl06g00299 885 Pfam Ubiquitin family 98 169 IPR000626 GO:0005515
Eupl06g00299 885 CDD HECTc 524 883 IPR000569 GO:0004842
Eupl06g00299 885 FunFam E3 ubiquitin-protein ligase UPL5 769 884 - -
Eupl06g00299 885 Gene3D Hect, E3 ligase catalytic domains 525 758 - -
Eupl06g00299 885 PRINTS Ubiquitin signature 148 169 IPR019956 -
Eupl06g00299 885 PRINTS Ubiquitin signature 127 147 IPR019956 -
Eupl06g00299 885 PRINTS Ubiquitin signature 106 126 IPR019956 -
Eupl06g00299 885 MobiDBLite consensus disorder prediction 75 89 - -
Eupl06g00299 885 Gene3D - 88 180 - -
Eupl06g00299 885 Gene3D Hect, E3 ligase catalytic domain 769 884 - -
Eupl06g00299 885 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 96 883 - -
Eupl06g00299 885 SUPERFAMILY Hect, E3 ligase catalytic domain 521 871 IPR035983 GO:0004842
Eupl06g00299 885 ProSiteProfiles Ubiquitin domain profile. 95 171 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00299 Eupl-Chr6 4594199 4609259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00299 95 169 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 1.28e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00299 - - tss:122640511 1340.87