Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00296 ATGCTCACATTAGTCTCAACGCGGTTATTTCTCTTTGTTGGAGATTCTTTACCCATAAGGAAGTTAGCCTGGTTCTCTAAGGCAGCCAGGATCCACACCAGTTTGCGGCTCCAGAGCCAGGTTGATCGTCAAAATGGGCCCCTCACTCTTGCAAGCCTCGGATTCAGATGTGAACTTGAAACAGCAAAGAAGGATAATACCAATAAACTTGGGCAGCTGAATTCAGCAATCGTAGTTCCTAAAACTAAAGCAAAGCCAATTAGAAGCAGTGGAGTTAAGGCAGTGGGGGTGAAAGCTCCGCTCGAAATAGAGGCAGCTCCATTTGCTGCAAAGACATTTGCCGAGCTCAATCTCCCGCCTTTGTTGATTGAGCAGTTAGAGAGGGTGGGCCTGACGATTCCCACTGACGTTCAGTCCACAGCAATTCCCACCATTCTGCAGAATCAGGACGTTGTAATTCAGTCCTACACAGGTTCAGGAAAGACACTGGCATATCTCCTTCCCATACTTTCTGAAGTGGGTCCCCTGAAGAAGAAGCCTTCCAATGGAAAAGAACCCGAAAAGAATATGGGTATAGAAGCAGTGATTGTGGCACCTTCAAGGGAGCTGGGAATGCAGATTGTGAGAGAGGTTGAGAAGCTGTTGGGACCTGCAGATAAGAAGCTGGTCCAACAGCTTGTTGGGGGTGCAAACCGATCAAGACAGGAAGAAGCTCTGAGGAAAAACAAGCCTGCCATTGTTGTTGGTACACCTGGGCGGATTGCGGAGATCAGTGCATGTGGGAGGCTGCACACGCATAGCTGTCGTTTCCTTGTCTTGGACGAAGTTGATGAACTCCTCTCATTCAATTTCCGTGAGGACATGCATAGGATATTGGAACATGTGGGGAAGAGGTCTGGTGCAGACCCATCCAACAGTGCACGGGATCCGCTAGCTAGGCGGGCCGAGCGTCAGACAATCATGGTCTCTGCAACAGTGCCTTTTTCGGTGATACGGGCGGCTAGGAGCTGGGGACGTGACCCACTTCTTGTCCGAGCCAAAAGTGTCCTCCCACTTGAGTCTGTCCCTGCTTCGGGAACTGTTTCATTGACGGACCCTTCCAGTTCCACGTCGAATTCAATGACTCAAGGAGCAGTGGAGAGCTTGCCGCCGCTCTTGAAGCACTACTACTGCGTGACAAAAGCACAACACAAGATTGACACCTTGAGAAGATGTGTCCACGCACTTGAGGCCAAGTCCGTGATTGCCTTCATGAATCACACCAAGCGGCTAAAGGACACTGTGTTCAAGCTAGAGGCCCGTGGGATGAAGGCTGTAGAGCTACATGGGGATCTTGGCAAGCTGGCCAGGTCGACAACTCTGAAGAAATTCAAGGGTGGAGAAGTGAGAGTGTTGGTCACAAATGAGCTTTCTGCAAGGGGGTTGGACATTTCAGAATGCGATCTTGTGGTTAATCTGGACCTTCCCACAGACTCGATTCATTATGCGCATCGGGCTGGCAGGACAGGTCGACTTGGCCGGAGGGGTAGTGTGGTCACCATATGTGAACAGCCAGAGGTTTTTGTTGTGAAAAAGCTGCGGAGGCAGCTTGGCATTCCGATTCAGGCTTGTGAATTTACTGAGGGCAAGCTTCTTGTCTCGAAAGAGAAAGAAGAAGAAGAAGAAGAAAGAAAAGAAAAAGAAAAAGAAAAAGAAAAGAAGAGAAGACCTTAG 1713 0.4945 MLTLVSTRLFLFVGDSLPIRKLAWFSKAARIHTSLRLQSQVDRQNGPLTLASLGFRCELETAKKDNTNKLGQLNSAIVVPKTKAKPIRSSGVKAVGVKAPLEIEAAPFAAKTFAELNLPPLLIEQLERVGLTIPTDVQSTAIPTILQNQDVVIQSYTGSGKTLAYLLPILSEVGPLKKKPSNGKEPEKNMGIEAVIVAPSRELGMQIVREVEKLLGPADKKLVQQLVGGANRSRQEEALRKNKPAIVVGTPGRIAEISACGRLHTHSCRFLVLDEVDELLSFNFREDMHRILEHVGKRSGADPSNSARDPLARRAERQTIMVSATVPFSVIRAARSWGRDPLLVRAKSVLPLESVPASGTVSLTDPSSSTSNSMTQGAVESLPPLLKHYYCVTKAQHKIDTLRRCVHALEAKSVIAFMNHTKRLKDTVFKLEARGMKAVELHGDLGKLARSTTLKKFKGGEVRVLVTNELSARGLDISECDLVVNLDLPTDSIHYAHRAGRTGRLGRRGSVVTICEQPEVFVVKKLRRQLGIPIQACEFTEGKLLVSKEKEEEEEERKEKEKEKEKKRRP* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00296 570 Coils Coil 543 570 - -
Eupl06g00296 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Eupl06g00296 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 344 IPR014001 -
Eupl06g00296 570 SMART helicmild6 425 506 IPR001650 -
Eupl06g00296 570 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 28 555 - -
Eupl06g00296 570 SMART ultradead3 130 355 IPR014001 -
Eupl06g00296 570 CDD SF2_C_DEAD 386 502 - -
Eupl06g00296 570 CDD DEADc 122 345 - -
Eupl06g00296 570 MobiDBLite consensus disorder prediction 548 570 - -
Eupl06g00296 570 Gene3D - 385 562 IPR027417 -
Eupl06g00296 570 Pfam Helicase conserved C-terminal domain 399 506 IPR001650 -
Eupl06g00296 570 Gene3D - 87 346 IPR027417 -
Eupl06g00296 570 MobiDBLite consensus disorder prediction 548 563 - -
Eupl06g00296 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 527 IPR027417 -
Eupl06g00296 570 Pfam DEAD/DEAH box helicase 135 330 IPR011545 GO:0003676|GO:0005524
Eupl06g00296 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 401 545 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00296 Eupl-Chr6 4492008 4498407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00296 112 535 Eukaryotic Initiation Factors Gene Family AT1G72730 25.176 3.91e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00296 - - nnu:104611079 835.869