LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g00288	ATGGGTATTTCTCGTGATTCCATGCACAAGAGACGCGCCACTGGAGGCAAGAAGAAGGCCTGGAGAAAGAAGCGAAAGTACGAGCTCGGAAGACAACCAGCGAACACGAAGCTATCGAGCAACAAGACAGTTCGAAGGGTTAGGGTTCGAGGAGGGAACGTGAAGTGGCGCGCACTGAGGCTTGACACGGGGAATTACTCTTGGGGGAGCGAGGCGGTGACCCGGAAGACCCGTATCCTTGATGTGGTCTACAATGCATCAAACAACGAGCTGGTGCGTACCCAGACTTTGGTGAAGAGTGCGATCGTTCAGGTAGATGCGGCACCATTCAAGCAGTGGTACCTCCAGCACTATGGTCTTGATATCGGGCGTAAGAAGAAGAGCTCCGCCGCTGCCAAGAAAGAAGGAGAGGAGGCTGAGGCTGCTGCTGCTGAGGAGGCAAAAAAAAGCAACCATGTCACGAGGAAACTTGAGAAGCGTCAACAAGGTCACAAACTTGACCCACACATTGAGGAGCAATTCAGTGGTGGCCGGTTAATGGCTGCAATCTCATCTCGGCCTGGTCAGTGTGGTCGAGCTGATGGATATATCTTGGAGGGTAAAGAGCTGGAGTTCTACATGAAGAAGCTCCAGAGGAAGAAGGGCAAGGGAGCTGCTTAG	660	0.5288	MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGLDIGRKKKSSAAAKKEGEEAEAAAAEEAKKSNHVTRKLEKRQQGHKLDPHIEEQFSGGRLMAAISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGAA*	220

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g00288	219	MobiDBLite	consensus disorder prediction	1	42	-	-
	Eupl06g00288	219	MobiDBLite	consensus disorder prediction	143	167	-	-
	Eupl06g00288	219	MobiDBLite	consensus disorder prediction	11	26	-	-
	Eupl06g00288	219	Gene3D	-	26	214	-	-
	Eupl06g00288	219	FunFam	40S ribosomal protein S8	109	177	-	-
	Eupl06g00288	219	Pfam	Ribosomal protein S8e	5	198	IPR022309	-
	Eupl06g00288	219	PANTHER	40S RIBOSOMAL PROTEIN S8	1	216	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Eupl06g00288	219	NCBIfam	ribosomal protein eS8	1	200	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Eupl06g00288	219	Coils	Coil	127	147	-	-
	Eupl06g00288	219	ProSitePatterns	Ribosomal protein S8e signature.	11	30	IPR018283	GO:0003735\|GO:0005840\|GO:0006412
	Eupl06g00288	219	FunFam	40S ribosomal protein S8	32	162	-	-
	Eupl06g00288	219	Gene3D	Ribosomal protein S8e, subdomain	109	177	IPR042563	-
	Eupl06g00288	219	CDD	Ribosomal_S8e_like	5	198	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g00288	Eupl-Chr6	4423215	4429086	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g00288	1	207	Cytoplasmic Ribosomal Protein Gene Family	AT5G59240	83.092	2.00e-126	354

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g00288	K02995		-	msin:131239655	376.326