LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl06g00285	ATGGTTTCGCTCGAAAATTCTCAACTTCCTTCAACGCAGACTCTCTGCTCTTCACCATCTTCATCTCTGTCTTCATCTAAGATCCAGAGATCTCAAGGTCGGTCAATGCGAACGATTCGCTCCAATCTCTACCAAAACGACCGGTCTTGCTCATATCCCGGTGCGATCGACGGAAAATCTGCCGAAATCTCAGAATACTTAACAGAGTCCGTCATCGATTTCAGACTCAGAGAGCTCGCCACAGAGAGCAACAACAAATCATTGAAGTCCTCTTCAGAATTCGATTTTCTCGATCTCTCTCGAGCTTTCAGCGATTTTTCAGCTTGTAGCAGCGACATCTCTGGAGAATTACAGAGATTAGCCTGTCTACCATCATCCGAAGATCTACAGTGCGATGAAGCCTCAAATCCAGAGACGGAGCGGGAGCCGGAGCCGGAGCCAGGCCTGGAGTTTCTACAACGGGAGAACCTCTCATCGGAGATTTTCGAGAGCATTTCTCCAGAGAATCTCGAATCAGTGGTGAAGAACTGTGTAGAAGGACTTCACTCTCCGTCTATCCCCGTAAAACGCTCGGCCGCAACGAGCCTACGTCTCCTTGCGAAGAACAGATCAGAAAACCGAGCTTTAATTGGTGAATCCGGCGCGGTCCCAGCTTTAATTCCTCTCCTCCGCTGCAGTGATCCATGGACGCAAGAACACGCAGTAACAGCTCTATTAAATCTCTCTCTCCACGAAGAAAATAAGAGCATGATCACGAACGCCGGAGCTATAAAACCGCTTGTGTACGTTTTGAAAACCGGCACAGAATCATCAAAGCAGAACGCAGCGTGTGCTCTGCTCAGCCTCGCGTTGATCGACGACAATAAAATCTCCATCGGTGCATGCGGAGCTATTCCACCGTTGGTTTCTCTGCTCTTGAACGGATCAAATCGAGGGAAGAAAGACGCCCTCACGACGCTATATAAGCTCTGCTCCATGAAGCAGAACAAAGAGAAGGCTGTGAGCGCAGGTGCTGTGAAACTTCTTGTTGTTTTGGTTTCGGAACGGGGGAGCGGTTTGGCTGAAAAGGCTATGGTAATTTTGAGCAGCTTGGCCAGTATTTTAGAGGGCAAAACCTCTATTGTGGAGGAAGGTGGTATTCCGGTTTTGGTTGAAGCGATTGAAGACGGATCGGTGAAAGGGAAGGAGTTCGCAGTGCTGACGCTTCTGCAACTCTGTATGGACAGTGTACGGAACAGAGGGTTGCTCGTGAGAGAAGGCGGGATCCCTCCGCTCGTTGCACTGTCTCAATCGGGAACAGCTCGAGCGAAGCACAAGGCGGAGACGCTACTGAGATATTTGAGAGAGCCAAGACAAGAGATCTCTTCAAGCGCTTAG	1377	0.4953	MVSLENSQLPSTQTLCSSPSSSLSSSKIQRSQGRSMRTIRSNLYQNDRSCSYPGAIDGKSAEISEYLTESVIDFRLRELATESNNKSLKSSSEFDFLDLSRAFSDFSACSSDISGELQRLACLPSSEDLQCDEASNPETEREPEPEPGLEFLQRENLSSEIFESISPENLESVVKNCVEGLHSPSIPVKRSAATSLRLLAKNRSENRALIGESGAVPALIPLLRCSDPWTQEHAVTALLNLSLHEENKSMITNAGAIKPLVYVLKTGTESSKQNAACALLSLALIDDNKISIGACGAIPPLVSLLLNGSNRGKKDALTTLYKLCSMKQNKEKAVSAGAVKLLVVLVSERGSGLAEKAMVILSSLASILEGKTSIVEEGGIPVLVEAIEDGSVKGKEFAVLTLLQLCMDSVRNRGLLVREGGIPPLVALSQSGTARAKHKAETLLRYLREPRQEISSSA*	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl06g00285	458	SMART	arm_5	326	366	IPR000225	GO:0005515
	Eupl06g00285	458	SMART	arm_5	285	325	IPR000225	GO:0005515
	Eupl06g00285	458	SMART	arm_5	203	243	IPR000225	GO:0005515
	Eupl06g00285	458	SMART	arm_5	409	449	IPR000225	GO:0005515
	Eupl06g00285	458	SMART	arm_5	367	407	IPR000225	GO:0005515
	Eupl06g00285	458	SMART	arm_5	244	284	IPR000225	GO:0005515
	Eupl06g00285	458	MobiDBLite	consensus disorder prediction	134	148	-	-
	Eupl06g00285	458	Pfam	Armadillo/beta-catenin-like repeat	286	325	IPR000225	GO:0005515
	Eupl06g00285	458	Pfam	Armadillo/beta-catenin-like repeat	204	242	IPR000225	GO:0005515
	Eupl06g00285	458	Pfam	Armadillo/beta-catenin-like repeat	245	283	IPR000225	GO:0005515
	Eupl06g00285	458	MobiDBLite	consensus disorder prediction	128	148	-	-
	Eupl06g00285	458	Gene3D	-	156	458	IPR011989	-
	Eupl06g00285	458	PANTHER	U BOX DOMAIN-CONTAINING	135	447	-	-
	Eupl06g00285	458	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	296	338	IPR000225	GO:0005515
	Eupl06g00285	458	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	214	256	IPR000225	GO:0005515
	Eupl06g00285	458	MobiDBLite	consensus disorder prediction	1	39	-	-
	Eupl06g00285	458	SUPERFAMILY	ARM repeat	167	447	IPR016024	-
	Eupl06g00285	458	FunFam	U-box domain-containing protein 4	313	454	-	-
	Eupl06g00285	458	FunFam	U-box domain-containing protein 4	160	312	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl06g00285	Eupl-Chr6	4377502	4384454	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl06g00285	150	452	U-box Gene Family	AT2G23140	48.553	2.40e-86	275

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl06g00285	-		-	vvi:100854922	652.899