Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00282 ATGGAATCGGATCATGGTAAGCTCTTCGTTGGTGGGATTTCGTGGGACACTAATGAAGATCGTTTGAGGGAATATTTCAAAAGTTATGGAGAAGTTGTGGAGGCTGTAATCATGAAGGATCGGACAACGGGTCGTGCCCGTGGCTTTGGTTTTGTTGTCTTCGCAGATCCGATTGTTGCAGAGAGAGTCGTTATGGATAAGCATACTATAGATGGTAGAACGGTTGAGGCGAAGAAGGCTGTTCCTAGGGACGATCAACACATTTTGAATAGAAACAGTAGCATTCAAGGATCACTGGGTCCTGCCCGCACAAAAAAGATATTTGTAGGAGGTTTAGCATCAACAGTCACAGAGACTGACTTTAAGAAGTACTTCGATCAGTTTGGAACAATCACAGATGTTGTGGTGATGTATGACCACAATACCCAAAGGCCAAGAGGTTTTGGATTCATCACTTATGATTCAGAGGACGCGGTGGAGAAAGTTTTGCTCAAAACGTTTCATGAGCTGAATGGTAAAATGGTTGAGGTCAAACGGGCTGTCCCCAAAGAGTTATCCCCAGGGCCCAGCCGGAGCCTGCTAGGTGGATATAACTATGGTTTGAGTAGAGTCAATAGCTTCCTCAATGGCTACACTCAGGGATATAATCCGAGCTCAGTTGGAGGTTATGGAGTTAGGATGGATGGTAGATTCAGTCCTGTTGCTGGTAGTCGGAGTGGGTTTTCTCCATTTGGTCCTCATGGTTATGGAATGGGCATGAATTTTGAGCCCGGGTTGAGCCCAAGCTATGGTGTGAGTTCAAACTTTACTACTAATCTCAACTATGGACGGGGATTGACCCCTTATTACAGTGGGAATTCAAATAGATATAGTAGTCATATTGGCTATAGTGGGGGCAATGGAGGAAATGGTTCTGTCTTAAGTTCAACGACTCGTAATGTATGGGGGAATGGGGGGCTTAGTTATGCCACAAACTCTGCGAGCTCTAGCGCTTACATGATCTCCGGAAGTGCAAGTCTTGGAGGAGATGCCTTAGGTAATAGTGGAGAGAATTGGGGTTCCTCTCCTTCTATTTCGGCTCTAGGTGGAGGGAGTGGCCCTGGCTATACAAGTGGTAATCTTGGTTATGGAAGCAGGGATAGCAGTTACGGGTTGGGAGGGGGAGGATATGGTAGAAACAGTGGAACTGGTGTGGCCCCTACGTCATCGTATGCTGCATCAAATGGTGCTTATGATGGAGCATATAGCGATTTCTATGGTGGCGGTTCAGTTTATGGGGACCCAACTTGGCGGTCTGCAACTTCCGAGCTAGATGGATCGGGTACGTTTGGTTATGGGATTGGCAATGAAGCCTCAGATGTTACAACTAAGAGTTCTACGGGTTACATTGGTGGTTATAGTGTTACCAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1440 0.4611 MESDHGKLFVGGISWDTNEDRLREYFKSYGEVVEAVIMKDRTTGRARGFGFVVFADPIVAERVVMDKHTIDGRTVEAKKAVPRDDQHILNRNSSIQGSLGPARTKKIFVGGLASTVTETDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSLLGGYNYGLSRVNSFLNGYTQGYNPSSVGGYGVRMDGRFSPVAGSRSGFSPFGPHGYGMGMNFEPGLSPSYGVSSNFTTNLNYGRGLTPYYSGNSNRYSSHIGYSGGNGGNGSVLSSTTRNVWGNGGLSYATNSASSSAYMISGSASLGGDALGNSGENWGSSPSISALGGGSGPGYTSGNLGYGSRDSSYGLGGGGYGRNSGTGVAPTSSYAASNGAYDGAYSDFYGGGSVYGDPTWRSATSELDGSGTFGYGIGNEASDVTTKSSTGYIGGYSVTNRQSNRGIAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00282 479 Gene3D - 4 88 IPR012677 -
Eupl06g00282 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Eupl06g00282 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Eupl06g00282 479 SUPERFAMILY RNA-binding domain, RBD 98 202 IPR035979 GO:0003676
Eupl06g00282 479 Gene3D - 102 188 IPR012677 -
Eupl06g00282 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Eupl06g00282 479 SMART rrm1_1 106 178 IPR000504 GO:0003723
Eupl06g00282 479 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Eupl06g00282 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Eupl06g00282 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 102 189 - -
Eupl06g00282 479 CDD RRM2_Hrp1p 106 183 - -
Eupl06g00282 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Eupl06g00282 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Eupl06g00282 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 164 IPR000504 GO:0003723
Eupl06g00282 479 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00282 Eupl-Chr6 4334935 4339222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00282 8 281 Eukaryotic Initiation Factors Gene Family AT1G71770 29.054 1.80e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00282 K14411 - ming:122060092 752.666