Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00256 ATGAGTTTTTCGGTCATTGCTGGTGTTTTTCTCAAGCTTCCAAGACTTTTCTTGAAGATATGTCGGTGGGTTTTGGTTAGGATGGCTCTGAATTGCAAGCTCTCTGGCTTTAAAGGCAGAGTATCAGCTAATTCAATGTCGAAGGCGAAGGAGCAGTTGCAGGGATCTAGTGGCGGTTGGAAGTGGAGGAGAAAACTTCTGGTTCTGTGGGTTTTAGGTGGTATTGCTGGGTCTACATGGGTTTTATCTGGTTTGATCGGTAATGGAGTTTCGAGGAGGAAGGAGAAGATATCAGACTTGTGGGAAGAGAAAGGTCGAATTTTGCAAGAGCGGTTCAATGTTAGCAAGAATCAACTTCATGCATTCTCCTCTCTGTTCGCGAAATTAGATCAGAAAGCACCCTGGGCATGTATGGAGAAACCAGGCATCGAAATGCCACTAAGCAATTGCATCGCCTGTGCTCTGAAGGCACTATGTTCAGAGAGGGACAAGTTTGAAAAGCAGTACAGGTGGGTGGCAGAGAATATAGAAGCTAATGACCAATGCCTGGTTCCGGACGAGTACATTCCCGAGAAGCACGACCCACAAGCTCTGACGGACGAACTTCTGCCAATTGTTTTATCTCAAGATACCATATTTTCTTTCCCTGATGATCTGACCTGTGGAAAGAATGGCTTGCAAACGGAGGCACCTGGAAACTGTGAACAAGAGCATTGCGAGAGTCCGCCTATCTGTTTGTTGAAGATATGTTGGTGGGTCTTAGTCAGTATGATGTTGACCTGGAAGGTCTCTAGTTTTCATGAAAGATTGTGGATTAATCCGAAGCAGAAGCAGGTTCAGCAGCAGCCAAAGGCTCAGCCGCAGTTGCTGCAGAAGCAGCATCAGCAATCTCAAAGCTCTTCTAAAGGTGGTGGGAAGTGGAGGACGAAGCTACTAATTCTGTTTTTCTTGGCTGGGGTGATTGGGGCTATGTGGTTATTTTGGTTCATAAACAAGAGTGCAATTTTGTGGAGGACAGAGATGCTTGCTAACATGTGTGATGAGCGGGCACGTATGTTGCAAGATCAGTTCAACGTGAGCATGAACCACGTCCATGCCTTGGCCATTCTTGTCTCGACCTTTCACCATGGGAAGCAACCTTCTGCCATTGATCAGAAAACATTTGCAGAGTATACAGAACGAACAGCTTTTGAAAGGCCACTTACTAGTGGTGTCGCCTATGCTTTGAAAGTTCTGCATTCTGAGAGAGAGCAGTTTGAGAAGCAGCATGGATGGACAATAAAGAAAATGGAGACGGAGGACCAGTCTCGTGTTCAAGATTACATTCCCGAGAAGCTGGACCCTTCACCCATCCAAGATGAATATGCACCTGTTATATTCTCCCAAGAAAGTGTCTCTCATATTGTCTCTATTGATATGATGTCTGGAAAGGAAGACCGTCAGAACATCTTGCGAGCAAGGGCATCAGGAAAGGGAGTCCTGACCTCTCCTTTCAAGCTATTAAAATCCAATCACCTGGGTGTGGTACTCACATTTGCTGTGTATGACACTGACCTACCCCCGGATGCTACACCTGAGCAACGCATCAAAGCTACTGAGGGGTATCTGGGTGCATCTTATGATGTCCCATCGTTAGTGGAGAAACTTCTGCACCAACTTGCCAGCAAACAAACAATTGTTGTGAATGTCTATGATACAACTAATAGTTCTGCACCCATCAACATGTATGGTCCTAATGTAACGGATACAGGTCTGTTGTACATCAGCAACCTTGATTTTGGGGATCCATTGCGAAGGCATGAGATGCACTGCAGATTTAAGCAGATACCTCCCCCACCTTGGACGGCAATAATGGCATCAGTGGGGGTCCTAGTGATCACATTGCTTGTAACCCATATCTTTCATGCAGCAATAAACCGAATTGCAAAGGTGGAGGGCGACTATCGTGAGATGATGGAGCTCAAAGTCCGAGCAGAAGCTGCCGATGTGGCTAAATCCCAGTTCCTGGCTACAGTTTCCCATGAAATTAGGACTCCAATGAACGGTGTTTTAGGAATGCTAGAGATGTTGATGGACACAGATCTCAATGAAACACAACAGGATTTTGCACGGACTGCTTACACAAGTGGGAAAGATTTAATATCACTAATAAACGAGGTCCTTGATCAGGCTAAGATAGAATCAGGCAGGCTGGAGCTTGAGGCCGTACCATTTGATCTACGTACTGTCCTTGATAACGTGATATCACTATTTTCTGTCAAATCGCATCCCAAAGGCGTCGAGTTGTCTGTTTACATATCCGATCGGGTGCCTGAAGTAGTCAGTGGGGACCCTGGACGGTTTCGGCAGATAATTACGAATCTTGTTGGAAATTCAATCAAGTTCACTGAGCGAGGGCATATATTTATCTCGGTGCATCTAGCAGACGAAGTGAGGAGTCCACTGGATGTTAGGGACGAAGTGCTGAAACAACAACTGGAGTCTGTTAAAGATGGGGTGGATGCATCTTATAATACGTTGAGTGGGTTTCCTGTAGTTGACAGGTGGAAGAGCTGGGAGAAATTTAAGAAGTTAAGCAGTGTAGATTCAATAGAAGCAGAGATGATTAGATTGCTTGTAACGGTTGAGGACACTGGTATTGGAATACCTTGGGATGCACAGAGCCGCATCTTCACGCCTTTCATGCAGGCTGATAGTTCCACCTCACGACATTATGGCGGTACTGGTATAGGCTTGAGCATCAGCAGGTGTTTGGTGTATTTGATGGGTGGTGAGATTGGATTTGTGAGTAAACCTCGGACTGGTAGTACCTTCACATTTACTGCAGCTTTTAAAAAAGGACAAACAAGTTCTCTGGATGCAAAGCGGCATCAGTTTGAATCAACAGTCTCAGAGTTACAAGGATTGAGAGGGTTGGTGGTTGATGGTAAAAGTATCCGTGCTGAGGTCACGAGGTATCATCTCCAGAGACTTGGAATATCTGTGGATATCGCTGTCAGTCTGGAATCCGCATGTTCTTATATATCAAACGCTTGCAACAACAGGGAGACTACGCGATTAGACATGGTACTTGTTGACAAAGACAGTTGGGGTGAGGGGACAGTTCTTGCACTCCGTCATCTGCTGAAAGAGCTCCGCCAAAATGGGAGAGATAAGCTCTCTGAAAACCGTCCAAAGATATTCCTCCTGGCTACCTCCATGAGCCCTCCTGAACACGATGAGTTCAAATCAGCTGGTTATGTGAATAATATAATAATGAAGCCCCTCCGGTTAAGTATGATGGTCATGTGCTTCCAACAAACCTTTGGTGTAGGGACCAAAAAGCACCAGGATAGAGGCAAACCATCAACCCTTCAGAGTCTACTAAATGGAAAGCACATCTTGGTCGTGGATGACAATGTTGTAAACCGTAGGGTGGCAGAAGGTGCACTAAAGAAGTATGGAGCTGATGTTACTTGTGTCGAGAGTGGGAAGGCTGCTCTAGGGATGCTCCGGCCACCCCACAAGTTCGATGCTTGCTTCATGGATCTCCAAATGCCTGAGATGGATGGGTTTGAAGCTACAAGACAAATCCGCTGTATAGAGAGTAAGGTTAATGAGCAGATTAAATTGGGGGAAGCATCTATGGAGATGTTTGGGAATGTGGCGCACTGGCACACGCCAATATTAGCCATGACGGCTGATGTGATCCAGGCAACACATGAAGAGTGCATGAAATTTGGGATGGATGATTACGTGTCAAAGCCGTTTGAAGAAGAACAGCTTTACTCAGCAGTGGCGCATTTCTTCGAGTCGGACCAATAG 3804 0.4579 MSFSVIAGVFLKLPRLFLKICRWVLVRMALNCKLSGFKGRVSANSMSKAKEQLQGSSGGWKWRRKLLVLWVLGGIAGSTWVLSGLIGNGVSRRKEKISDLWEEKGRILQERFNVSKNQLHAFSSLFAKLDQKAPWACMEKPGIEMPLSNCIACALKALCSERDKFEKQYRWVAENIEANDQCLVPDEYIPEKHDPQALTDELLPIVLSQDTIFSFPDDLTCGKNGLQTEAPGNCEQEHCESPPICLLKICWWVLVSMMLTWKVSSFHERLWINPKQKQVQQQPKAQPQLLQKQHQQSQSSSKGGGKWRTKLLILFFLAGVIGAMWLFWFINKSAILWRTEMLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKQPSAIDQKTFAEYTERTAFERPLTSGVAYALKVLHSEREQFEKQHGWTIKKMETEDQSRVQDYIPEKLDPSPIQDEYAPVIFSQESVSHIVSIDMMSGKEDRQNILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYDTDLPPDATPEQRIKATEGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNSSAPINMYGPNVTDTGLLYISNLDFGDPLRRHEMHCRFKQIPPPPWTAIMASVGVLVITLLVTHIFHAAINRIAKVEGDYREMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLEMLMDTDLNETQQDFARTAYTSGKDLISLINEVLDQAKIESGRLELEAVPFDLRTVLDNVISLFSVKSHPKGVELSVYISDRVPEVVSGDPGRFRQIITNLVGNSIKFTERGHIFISVHLADEVRSPLDVRDEVLKQQLESVKDGVDASYNTLSGFPVVDRWKSWEKFKKLSSVDSIEAEMIRLLVTVEDTGIGIPWDAQSRIFTPFMQADSSTSRHYGGTGIGLSISRCLVYLMGGEIGFVSKPRTGSTFTFTAAFKKGQTSSLDAKRHQFESTVSELQGLRGLVVDGKSIRAEVTRYHLQRLGISVDIAVSLESACSYISNACNNRETTRLDMVLVDKDSWGEGTVLALRHLLKELRQNGRDKLSENRPKIFLLATSMSPPEHDEFKSAGYVNNIIMKPLRLSMMVMCFQQTFGVGTKKHQDRGKPSTLQSLLNGKHILVVDDNVVNRRVAEGALKKYGADVTCVESGKAALGMLRPPHKFDACFMDLQMPEMDGFEATRQIRCIESKVNEQIKLGEASMEMFGNVAHWHTPILAMTADVIQATHEECMKFGMDDYVSKPFEEEQLYSAVAHFFESDQ* 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00256 1267 Gene3D CHASE domain 383 609 IPR042240 -
Eupl06g00256 1267 ProSiteProfiles Histidine kinase domain profile. 671 946 IPR005467 -
Eupl06g00256 1267 ProSiteProfiles Response regulatory domain profile. 1126 1263 IPR001789 GO:0000160
Eupl06g00256 1267 SMART HisKA_10 664 729 IPR003661 GO:0000155|GO:0007165
Eupl06g00256 1267 FunFam Histidine kinase 4 636 727 - -
Eupl06g00256 1267 SMART REC_2 1125 1259 IPR001789 GO:0000160
Eupl06g00256 1267 Gene3D - 949 1101 - -
Eupl06g00256 1267 Gene3D - 632 727 - -
Eupl06g00256 1267 CDD REC_hyHK_CKI1_RcsC-like 1127 1259 - -
Eupl06g00256 1267 FunFam Histidine kinase 4 383 610 - -
Eupl06g00256 1267 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 776 944 IPR003594 -
Eupl06g00256 1267 Gene3D - 1119 1266 - -
Eupl06g00256 1267 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 649 730 IPR036097 GO:0000155|GO:0007165
Eupl06g00256 1267 SMART CHASE_2 379 578 IPR006189 -
Eupl06g00256 1267 Gene3D - 728 948 IPR036890 -
Eupl06g00256 1267 PRINTS Bacterial sensor protein C-terminal signature 889 899 IPR004358 GO:0016310|GO:0016772
Eupl06g00256 1267 PRINTS Bacterial sensor protein C-terminal signature 871 885 IPR004358 GO:0016310|GO:0016772
Eupl06g00256 1267 PRINTS Bacterial sensor protein C-terminal signature 906 924 IPR004358 GO:0016310|GO:0016772
Eupl06g00256 1267 PRINTS Bacterial sensor protein C-terminal signature 930 943 IPR004358 GO:0016310|GO:0016772
Eupl06g00256 1267 Pfam CHASE domain 382 576 IPR006189 -
Eupl06g00256 1267 CDD HATPase_EvgS-ArcB-TorS-like 781 942 - -
Eupl06g00256 1267 FunFam Histidine kinase 3 1120 1267 - -
Eupl06g00256 1267 Pfam Response regulator receiver domain 1127 1259 IPR001789 GO:0000160
Eupl06g00256 1267 SUPERFAMILY CheY-like 1122 1263 IPR011006 -
Eupl06g00256 1267 SUPERFAMILY CheY-like 966 1101 IPR011006 -
Eupl06g00256 1267 Gene3D - 88 136 - -
Eupl06g00256 1267 Gene3D - 330 382 - -
Eupl06g00256 1267 CDD HisKA 664 725 IPR003661 GO:0000155|GO:0007165
Eupl06g00256 1267 PANTHER TWO-COMPONENT HISTIDINE KINASE 273 1256 - -
Eupl06g00256 1267 SMART HKATPase_4 776 946 IPR003594 -
Eupl06g00256 1267 ProSiteProfiles CHASE domain profile. 379 603 IPR006189 -
Eupl06g00256 1267 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 718 941 IPR036890 -
Eupl06g00256 1267 ProSiteProfiles Response regulatory domain profile. 970 1102 IPR001789 GO:0000160
Eupl06g00256 1267 Pfam His Kinase A (phospho-acceptor) domain 664 729 IPR003661 GO:0000155|GO:0007165
Eupl06g00256 1267 MobiDBLite consensus disorder prediction 282 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00256 Eupl-Chr6 3936283 3954235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00256 48 212 Miscellaneous Gene Families AT5G35750 34.857 4.73e-27 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl06g00256 CHASE 2.3e-35 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00256 K14489 - nnu:104594216 1788.85