Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00243 ATGGCTATTTCTTCGATATCCACAAATCTTCCTCTTCTTCCACTCTGCAACTCTACCATTTCCGCAAAACCCAAACATTCGGTCTTCTCTTTACCCTCAAATGTCTTAAAGCTTGTATCCCTAAAATCTACTCACTCTTCTAAGGTTTTTGCTGCGCCAGAGCTTCTTGAATCTGAAGAAACCCTAGAACTACCTCCTGAAACCCTAGAAGGCCTGATTCATCCACCTTCGAGGTTGGTCGGGGGATCTGAAACTCTGGGTACTTCTTCAATCGCTATAAGTGCTGATGTCGACAAGATGGCACCAAAGCAGAAGATTAGAATTAAACTGAGGTCTTACTGGGTGCCCCTGATAGAGGACTCATGCAAGCAGATAATGGATGCTGCAAGGACGACCAACGCCAAGATGATGGGCCCTGTGCCTCTGCCTACCAAGAAGCGAATCTATTGTGTGCTCAAATCCCCACACGTGCACAAAGATGCAAGATTCCATTTTGAGATCCGGACCCACCAGCGCCTCATTGATATTCTCTACCCAACTGCCCAAACGATAGACTCTTTGATGCAACTCGACCTCCCTGCAGGGGTGGATGTAGAGGTCAAACTGTAA 609 0.468 MAISSISTNLPLLPLCNSTISAKPKHSVFSLPSNVLKLVSLKSTHSSKVFAAPELLESEETLELPPETLEGLIHPPSRLVGGSETLGTSSIAISADVDKMAPKQKIRIKLRSYWVPLIEDSCKQIMDAARTTNAKMMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00243 202 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 43 202 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl06g00243 202 Pfam Ribosomal protein S10p/S20e 107 201 IPR027486 -
Eupl06g00243 202 PRINTS Ribosomal protein S10 family signature 161 175 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl06g00243 202 PRINTS Ribosomal protein S10 family signature 140 155 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl06g00243 202 PRINTS Ribosomal protein S10 family signature 105 118 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl06g00243 202 Hamap 30S ribosomal protein S10 [rpsJ]. 103 202 IPR001848 GO:0003735|GO:0005840|GO:0006412
Eupl06g00243 202 Gene3D Ribosomal protein S10 domain 92 202 IPR036838 -
Eupl06g00243 202 SMART Ribosomal_S10_2 107 201 IPR027486 -
Eupl06g00243 202 ProSitePatterns Ribosomal protein S10 signature. 129 144 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Eupl06g00243 202 SUPERFAMILY Ribosomal protein S10 105 202 IPR036838 -
Eupl06g00243 202 FunFam 30S ribosomal protein S10 100 202 - -
Eupl06g00243 202 NCBIfam 30S ribosomal protein S10 104 201 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00243 Eupl-Chr6 3803921 3809380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00243 105 202 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.313 1.81e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00243 K02946 - ming:122072019 281.567