Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00225 ATGTCATCAAAGTCGAACAAAGCGACTTCTTCTAGGAGTAGCTCCGCTCGTTCGAAACACAGTGCCCGCGTGGTTGCTCAGACCACTGCTGATGCGAAGCTTCATGTAGATTTTGAAGAGTCCAACCAGTTGTTTGATTATTCCACTTCAATTGACTTCAACATCTCTAGTGCTGACAGCAATGTCCCCTCCTCCACTGTGTCTGCATACCTCCAAAGGATGAAGAGGGGGAAACTCATCCAACCATTCGGCTGCATGATTGCTGTCGAAGAACATACTTTCGCTGTTCTTGCCTACAGTGAGAATGCCCCTGAGATGTTGGATTTAGCCCCACATGCAGTCCCCAGCATTGAGCAACAAGAAGCTTTGACCATTGGAACAGATGTTCTGACACTCTTCCGGTCTTCGAGTGCAGCAGCCTTGCAGAAAGCCGCCAATTTTGGAGAACTTAATCTCCTAAATCCAATATTGGTACACTGTAGAAGCTCAGGTAAGCCCTTTTATGCGATTATGCACCGCATTGATGTCGGTTTGGTTATAGATTTGGAGCCAGTGAATCCTGCCGATGTACCAGTAACTGCCGCAGGGGCATTGAAATCATATAAGCTTGCAGCCAAAGCCATATCCAGATTGCAGTCTTTGCCGAGTGGAAATATCTCGCTGTCATGTGATGTATTGGTTCAGGAAGTGAGCGATCTGACAGGTTATGATAGGGTAATGGCATATAAGTTTCACGAAGATGAACATGGGGAAGTGGTCGCTGAATGCCGGAGATCCGATTTGGAACCGTATCTAGGCTTGCATTACCCAGCTACTGATATACCACAAGCTTCAAGGTTCCTCTTCATGAAGAACAAGGTTAGGATGATATGTGATTGTTATGCCTCACCAGTTAAAGTTATTCAGGACAAGAAATTGGTGCAGCCGTTGAGTCTGTGTGGGTCTACTCTGAGAGCTCCTCATGGGTGTCATGCTCAATACATGGCAAATATGGGTTCCATTGCATCTCTTGTGATGTCTGTGACCATCAACGAGGATGATGATGAGACCGAGTCTGATCAGAAAACGGGAAGGAAGCTTTGGGGGTTGGTAGTTTGTCATCACACAAGCCCTAGGTTTGTCCCATTCCCACTGAGGTACGCCTGCGAGTTCTTGATACAAGTTTTTGGTATACAGCTTAACAAGGAAGTGGAGTTGGAGGCTCAGTTGAGGGAGAAGCATATTCTGCAGACGCAGACCGTGCTTTGTGACATGCTCCTTAGGGATGCTCCTGTAGGGATTGTTACTCAATCACCTAATGTGATGGACCTTGTCAAATGCGACGGTGCCGCACTGTACTACAGGAACAAATTTTGGTTTCTTGGGATAACCCCTACAGAGGCACAAATAAGAGATATAGCTGGATGGCTTCTTGAGTACCACGATGGGAGTACAGGTTTAAGTACGGATAGCCTCATGGAAGCTGGCTATCCGGATGCTTCAGTTCTTGGGGATGCAGTTTGTGGAATGGCTGCCGTTAAGATTACTCCAAGGGACTTCCTCTTTTGGTTCCGATCCCATACAGCTAAAGAGATCAAGTGGGGTGGTGCGAAACATGACCCTGTCGATAAGGACGGCGGCAGGAAGATGCATCCTAGATCATCGTTCAAGGCCTTCTTGGAGGTGGTTAAGCAGCGGAGTCTACCTTGGGAAGATGTTGAGATGGATGCCATCCATTCCTTACAGCTGATATTGCGAGAATCCTTGCAAGACGAAATTGTGAATGACGTCAAGACAATTGTAAATGCACCAATGGTTGATACAAGGATCCAGGGGGTGGATGAACTCCGTATCATCACAAACGAGATGGTTCGCCTTATTGAGACAGCTCCAGTCCCCATTTTGGCTGTTGATGCTTCCGGTAATGTAAATGGATGGAATACCAAGGCAGCCGAATTAACAGGAATGTTTGCACAGCAAGCTATTGGCATGCCATTAATTGATATTGTTGAAGATGATTCAGTTGAAGTGGTGAAGAACATGCTCTACTTGGCTTTGCAAGGCATAGAAGAACAAAACATCGAAATCAAGCTTAAAACATTCAGACCTCGGGAAAATAATGGTCCCATAATCTTGGTGGTTAATTCATGTTGTAGCCGGGATACTAAGGAAAGTGTCGTAGGTGTTTGTTTTGTTGGGCAAGATGTTACAGGGCAAAAGATGGTGATGGACAAATACACCCGTATCCAAGGCGATTACGTTGCGATTGTGCAGAACCCATCTGCACTTATTCCTCCGATATTTATGATAGATGAGTATGGGTGTTGCTTTGAGTGGAACGATGCCATGCAGAAATTGACGGGTTTGAAGAGGGAAGAAGCCATTGATAGGATGCTTGTTGGGGAAGTGTTCAGTCTTCATAATTTTAGTTGCCGTGTCAAAGACCAAGACATGTTGACCAAGCTCAGGATATTACTGAATGGAGTAATTGCTGGCCAAGATGGGGATAAATTGCTTTTTGGATTCTTTGACCGGCAGGGTAAGTACGTGGAAGCCTTACTCTCTGCAAATAAGAGGATGGATGCAAATGGTAGGATCACCGGGGTTCTCTGCTTTTTGCATGTGGCCAGCCCCGATCTTCAACATGCTTTGCAGGTGCAGAGAATTTCAGAACAGGCTGCAATGAATAGCCTCAAGGAATTGGCACATATTCGTCGGGAAATTAGAAACCCACTTCGTGGGATAATGTTTACAAGCAATCTGATGGAGGCTTCTGATCTGAGCAAAGAGCAGAAGCAACTTCTGAGGACGAGCACTCTGTGTCAGGAGCAATTAGCCAAGATACTAGATGACACTGATTTAGAGAGCATTGAAGAGTGCTATTTAGGAATAAACGGCATGGAATTCAATCTCGGGGAAGCTTTGGAGGCAGTCATAATTCAAGGGATGCCTCTGAGTAGGGAGCGACAGGTGCAGCTCATCCATGATCTGCCCGCAGAATTATCCTCCATGTACTTGTATGGCGACAACTTGAGGCTTCAGCAGGTCCTGTCCGACTTCTTGACGAATGCGATCCTGTTCACCCCGGCATCTGAAGGGTCATCAGTTGAGCTCAGGGTCATTTCAAGAAGGGAACGTATAGGGACTGGAGTACACATTGTTCATCTTGAATTCCGGATTGCCCACCCGGCGCCAGGGATTCCCGAGGCTTTGATTCAAGAAATGTTCCACCACAGCCAAGGCATCTCAAGGGAAGGTCTTGGCTTGTATATCAGCCAGAAGCTTGTCAAGATCATGAACGGCACTGTACAGTATCTTAGGGGAGCAGAGAGTTCATCTTTCATCATTCTTGTTGAGTTCCCCTTGGCTCACCATATTGAACCCAGGTGA 3369 0.4633 MSSKSNKATSSRSSSARSKHSARVVAQTTADAKLHVDFEESNQLFDYSTSIDFNISSADSNVPSSTVSAYLQRMKRGKLIQPFGCMIAVEEHTFAVLAYSENAPEMLDLAPHAVPSIEQQEALTIGTDVLTLFRSSSAAALQKAANFGELNLLNPILVHCRSSGKPFYAIMHRIDVGLVIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLSCDVLVQEVSDLTGYDRVMAYKFHEDEHGEVVAECRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCYASPVKVIQDKKLVQPLSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTINEDDDETESDQKTGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQLNKEVELEAQLREKHILQTQTVLCDMLLRDAPVGIVTQSPNVMDLVKCDGAALYYRNKFWFLGITPTEAQIRDIAGWLLEYHDGSTGLSTDSLMEAGYPDASVLGDAVCGMAAVKITPRDFLFWFRSHTAKEIKWGGAKHDPVDKDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRESLQDEIVNDVKTIVNAPMVDTRIQGVDELRIITNEMVRLIETAPVPILAVDASGNVNGWNTKAAELTGMFAQQAIGMPLIDIVEDDSVEVVKNMLYLALQGIEEQNIEIKLKTFRPRENNGPIILVVNSCCSRDTKESVVGVCFVGQDVTGQKMVMDKYTRIQGDYVAIVQNPSALIPPIFMIDEYGCCFEWNDAMQKLTGLKREEAIDRMLVGEVFSLHNFSCRVKDQDMLTKLRILLNGVIAGQDGDKLLFGFFDRQGKYVEALLSANKRMDANGRITGVLCFLHVASPDLQHALQVQRISEQAAMNSLKELAHIRREIRNPLRGIMFTSNLMEASDLSKEQKQLLRTSTLCQEQLAKILDDTDLESIEECYLGINGMEFNLGEALEAVIIQGMPLSRERQVQLIHDLPAELSSMYLYGDNLRLQQVLSDFLTNAILFTPASEGSSVELRVISRRERIGTGVHIVHLEFRIAHPAPGIPEALIQEMFHHSQGISREGLGLYISQKLVKIMNGTVQYLRGAESSSFIILVEFPLAHHIEPR* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00225 1122 Pfam PAS fold 615 729 IPR013767 GO:0006355
Eupl06g00225 1122 Pfam PAS fold 745 867 IPR013767 GO:0006355
Eupl06g00225 1122 CDD HisKA 894 944 IPR003661 GO:0000155|GO:0007165
Eupl06g00225 1122 Gene3D - 199 558 IPR029016 -
Eupl06g00225 1122 FunFam Phytochrome 608 739 - -
Eupl06g00225 1122 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Eupl06g00225 1122 ProSiteProfiles PAS repeat profile. 612 682 IPR000014 -
Eupl06g00225 1122 Gene3D PAS domain 78 321 - -
Eupl06g00225 1122 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355|GO:0009584
Eupl06g00225 1122 MobiDBLite consensus disorder prediction 1 24 - -
Eupl06g00225 1122 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1105 IPR003594 -
Eupl06g00225 1122 NCBIfam PAS domain S-box protein 619 735 IPR000014 -
Eupl06g00225 1122 PIRSF Phytochrome_conventional 1 1121 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Eupl06g00225 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Eupl06g00225 1122 Gene3D - 870 951 - -
Eupl06g00225 1122 Pfam Phytochrome region 410 584 IPR013515 GO:0006355|GO:0009584
Eupl06g00225 1122 SUPERFAMILY GAF domain-like 405 583 - -
Eupl06g00225 1122 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 387 IPR016132 -
Eupl06g00225 1122 Gene3D PAS domain 606 742 - -
Eupl06g00225 1122 FunFam Phytochrome 402 536 - -
Eupl06g00225 1122 FunFam Phytochrome 954 1115 - -
Eupl06g00225 1122 FunFam Phytochrome 758 869 - -
Eupl06g00225 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 616 725 IPR035965 -
Eupl06g00225 1122 SMART HKATPase_4 1001 1117 IPR003594 -
Eupl06g00225 1122 Pfam His Kinase A (phospho-acceptor) domain 894 952 IPR003661 GO:0000155|GO:0007165
Eupl06g00225 1122 SUPERFAMILY GAF domain-like 198 394 - -
Eupl06g00225 1122 ProSiteProfiles PAS repeat profile. 742 797 IPR000014 -
Eupl06g00225 1122 Gene3D - 402 575 IPR043150 -
Eupl06g00225 1122 CDD PAS 623 729 IPR000014 -
Eupl06g00225 1122 Pfam GAF domain 221 397 IPR003018 GO:0005515
Eupl06g00225 1122 CDD PAS 756 867 IPR000014 -
Eupl06g00225 1122 Gene3D - 955 1117 IPR036890 -
Eupl06g00225 1122 PANTHER TWO-COMPONENT HISTIDINE KINASE 843 1098 - -
Eupl06g00225 1122 Gene3D PAS domain 758 869 - -
Eupl06g00225 1122 SMART gaf_1 218 407 IPR003018 GO:0005515
Eupl06g00225 1122 CDD HATPase_Phy-like 1000 1113 IPR044767 -
Eupl06g00225 1122 SMART pas_2 614 680 IPR000014 -
Eupl06g00225 1122 SMART pas_2 744 813 IPR000014 -
Eupl06g00225 1122 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 962 1114 IPR036890 -
Eupl06g00225 1122 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 864 IPR035965 -
Eupl06g00225 1122 SMART HisKA_10 890 953 IPR003661 GO:0000155|GO:0007165
Eupl06g00225 1122 Pfam PAS fold 69 185 IPR013654 GO:0006355
Eupl06g00225 1122 ProSiteProfiles Histidine kinase domain profile. 896 1117 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00225 Eupl-Chr6 3596096 3609301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00225 8 1115 Histidine Kinase Gene Family AT5G35840 64.658 0.0 1532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00225 - - msin:131229686 1862.43