Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00221 ATGGAAAGCACAAGCCAGTATGATTCGTTAGATGCCAATGATGACATGTTTGAAGACGGTCCCGAATGTGGAGATAAATTGATAAATATTGATACACACTCAGTTAATGAACTTACTTCATCGAACGAATTACAAGCAGTTAATGAGGTGACATGCTCCAAACCATGTGTTGGGATGGAGTTTGACTCTCTTGATAAGGCATATCTCTTCTACAATGAATATGCTAGGTTCATGGGTTTCAGCATACGGAAAGCTAAAAATCGTAGATCAAATATTGATGGATCGTTTCTCTTTCGTCGATTTTGTTGTTCAAAAGAAGGTCATCGTCGAAAAAGGCGTGAAAATGATGATGATGAACCAAAGAGAGTGAAAGATGGTGTCATAGTGAAGGTGAGGAGACGAAATGTACCGTCCATAAGAGTTGGTTGCAATGCGAAGTTAGACTTGAAAAGAACGACCAATGGTAGATGGGTTGTACAAAAATTTGATGAGGAACATAACCATGAATGTGCTCGTCAGGGAGAAACGCATCTGCTTAGGTCTCATAAACGTGAACGATCTACTCAAGGACAACAAAGTGATAGTTTGCATGGTGGGAGTGAGAATGTTGGTAATGTTGAACAGGATTTGAGAAATTATGTAAGTGAGAAAAAGACGAAGAAACCTGAGAAGGGAGATGTAAAGGTTGTCCTCAATTACTTTACACAGATGCAAACTGAGAATCCATCCTTCTTTTATGCCATACAAGTTGATAAAGAGGACCAGATATCAAACTTTTTTTGGGCCGATGCGAGGTCAAGAATGGATTTTGGTTACTTTGGGGATGTGATTTATTTCGATACAACTTATGGGACTTACAAGTATGGACGGCCATTTGCTCCTATTCTAGGTGTAAATCATCACCTACAGACAGTATTGTTTGGTTGTGCAATACTTTTTAATGAAAGTGAAGAGTCGTTTGCTTGGTTGTTAGAGACATTGTTGAAAGCGATGTCTGGGCATCGTCCAATTGCAATAATTACTGATCAAGATACAACATTGGCGAAAGCAATTGGACGAGTTTTACCAGGAACACACCACCGTTTATGTTTATGGCACATCTTCCAGGATGCGGCTAAACATTTGAGTCATTTTTACAGTACAAAGGATGATTTTAGTACAGATTTCAAGAAATGCATCTATGAACCCCAGTGGTGTGATGAGTTTGAGTCAAGTTGGGCATTGTTACTCGACAAATATGAACTTTGTGATAATGAGTGGCTCGATAACATGTATAAGAAACGGCACAAATGGGTTCCAGTCTACTCAAGGCACATCTTCCATGCAGACATGACAACGAGTCAACGGAGTGAAAGTATAAACTCCTTCTTTAATGGATTCCTGAATGGGTCACTTCCTCTTAGTGAGTTTGTTCAACAATATGAGAAGGCACTTTTTTGTAGACGTGAAGTGGAAACCTATGAAGATTTTAAGTCCCACCAAACAAGGCCTGTTTTGAAGTTGGATGTTCCAATGGAACAACAAGCAGCTGACATTCATACAAGATCGGTGTTTAAAGAGTTCCATAAGGAGTTCTGCGATAGTTTTAACTACATCGCTGAAGAAACAGGAAGGGTAGGGACAAACTGGTCATACGTGGTGTCAAGGTGGGGGCAAAATAGGAATTGCCTTGTTAATTTCAGCTCTTGTGACAATGATATTCGGGTGACTTGCAGTTGTCAAAACTTTGAGTTCACAGGTATTTTGTGTAGGCATATCTTCAAAGTCTTCACAGTAAGAAACATTATGTTGGTTCCGGAGGTCTACATCAGAAAAAGGTGGACAAAAAAAGCCAAGTATGGGGTTGTTTTGGATGAAAGCAGTAGGGAAATGCTGGCTGACTGTCAGACATCGTCAGACTTGCGCTACAATGATCTATGCCACCTATCTTTTAACCTCTCTGCTAAGGCTGCGATCTCTATAAAGGCTTACCAAATGGCAAAGCGTAATATGGAAATGATATTAAGCGAATTGGAAAAAGTGGCTGAGGAAGACATGGTTATTAGTCAGCTTGACATTGAGGGCACTAGAAGTTTGCATTCTCCGGTTGAGGTTGTTAATAATATTGGGGGATCAAATCAGCTTGTGAGTGAAGAGAATCAGACATTATCTTCGGTGAACCACGTAACTTTGCAAACTAGAAGAGTCGGGGATAAAAGAACTGGCTTTTGGCTATGTTTATAA 2223 0.399 MESTSQYDSLDANDDMFEDGPECGDKLINIDTHSVNELTSSNELQAVNEVTCSKPCVGMEFDSLDKAYLFYNEYARFMGFSIRKAKNRRSNIDGSFLFRRFCCSKEGHRRKRRENDDDEPKRVKDGVIVKVRRRNVPSIRVGCNAKLDLKRTTNGRWVVQKFDEEHNHECARQGETHLLRSHKRERSTQGQQSDSLHGGSENVGNVEQDLRNYVSEKKTKKPEKGDVKVVLNYFTQMQTENPSFFYAIQVDKEDQISNFFWADARSRMDFGYFGDVIYFDTTYGTYKYGRPFAPILGVNHHLQTVLFGCAILFNESEESFAWLLETLLKAMSGHRPIAIITDQDTTLAKAIGRVLPGTHHRLCLWHIFQDAAKHLSHFYSTKDDFSTDFKKCIYEPQWCDEFESSWALLLDKYELCDNEWLDNMYKKRHKWVPVYSRHIFHADMTTSQRSESINSFFNGFLNGSLPLSEFVQQYEKALFCRREVETYEDFKSHQTRPVLKLDVPMEQQAADIHTRSVFKEFHKEFCDSFNYIAEETGRVGTNWSYVVSRWGQNRNCLVNFSSCDNDIRVTCSCQNFEFTGILCRHIFKVFTVRNIMLVPEVYIRKRWTKKAKYGVVLDESSREMLADCQTSSDLRYNDLCHLSFNLSAKAAISIKAYQMAKRNMEMILSELEKVAEEDMVISQLDIEGTRSLHSPVEVVNNIGGSNQLVSEENQTLSSVNHVTLQTRRVGDKRTGFWLCL* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00221 740 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 672 IPR031052 GO:0006355
Eupl06g00221 740 MobiDBLite consensus disorder prediction 176 190 - -
Eupl06g00221 740 Pfam SWIM zinc finger 570 591 IPR007527 GO:0008270
Eupl06g00221 740 ProSiteProfiles Zinc finger SWIM-type profile. 556 594 IPR007527 GO:0008270
Eupl06g00221 740 Pfam MULE transposase domain 276 369 IPR018289 -
Eupl06g00221 740 Coils Coil 657 677 - -
Eupl06g00221 740 SMART 26again6 569 596 IPR006564 GO:0008270
Eupl06g00221 740 MobiDBLite consensus disorder prediction 176 203 - -
Eupl06g00221 740 Pfam FAR1 DNA-binding domain 70 171 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00221 Eupl-Chr6 3483270 3485492 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Eupl06g00221 FAR1 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00221 - - psom:113348902 983.786