Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00218 ATGGGTAATGTTAGTGTTAGGGAAGATGGGGGTAACAACCCATCTGGAGCGGGGGTTGTGGAAGGGCAGTTTTATGGGCATGGTGGGCAGCACATGGAGGAGGCTACCCAGCGTAGTGCTCACGTTAGCTATGCGCACCACGGGGAGCCTCCAGACTTGATGCGTCAATCTCCTCCTCATAGCCCCAGAGCCGCCCGGTCACCTTTGATGTTCACTCCTCAGGTCCCCATGGTTCCATTTCAGAGACCCGACGAGATGCACACTCGAAGACATGCATGGATGCATAGTGCTACTGACTACGAGGACATGTTCTGTGAGCAAGGGATACCAACAATGATCACATGGAGCTATGGTGGCAAGGAAGTAGCTGTGGAAGGATCATGGGATAACTGGAAGACAAAAAAGGCCTTGCAGAGATCAGGCAAAGACTTCACTATTATGAAGGTTCTTCCATCGGGTGTCTACCAGTACAGGTTTCTTGTTGATGGAGAGTGGAGGCATGCCCCTGAATTTCCATGGGCCCACGACGAAATGGGAAATGCTTACAACATTTTGGATGTGCAGGATTATGTTCCCGAGGACCTTGAAAGCATTGCTGGTTTTGAACCTCCTCAGTCCCCAGAGTCAAGCTATAATAACTCGCACCTTGGTTCGGAGGATTACGCGAAGGAGCCACCATTAGTCCCACCGCACCTACAAATGACGCTGCTCAACATGCCATCATCATGCATGGAAAACCCCCCTTCTCTGTTGAGACCACCACACGTGGTACTTAACCATCTGTACGTGCAGAAAGGGAAGAGTGGTCAGTCTGTTGTGGCACTTGGTTCGACACACCGTTTTCTGGCTAAGTATGTGACTGTGGTGCTCTATAAGTCCCTGCAGAGATGGTAG 894 0.5089 MGNVSVREDGGNNPSGAGVVEGQFYGHGGQHMEEATQRSAHVSYAHHGEPPDLMRQSPPHSPRAARSPLMFTPQVPMVPFQRPDEMHTRRHAWMHSATDYEDMFCEQGIPTMITWSYGGKEVAVEGSWDNWKTKKALQRSGKDFTIMKVLPSGVYQYRFLVDGEWRHAPEFPWAHDEMGNAYNILDVQDYVPEDLESIAGFEPPQSPESSYNNSHLGSEDYAKEPPLVPPHLQMTLLNMPSSCMENPPSLLRPPHVVLNHLYVQKGKSGQSVVALGSTHRFLAKYVTVVLYKSLQRW* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00218 297 Pfam Glycogen recognition site of AMP-activated protein kinase 109 189 IPR032640 -
Eupl06g00218 297 Gene3D - 199 294 - -
Eupl06g00218 297 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 296 IPR043554 -
Eupl06g00218 297 SUPERFAMILY E set domains 107 189 IPR014756 -
Eupl06g00218 297 CDD E_set_AMPKbeta_like_N 110 187 - -
Eupl06g00218 297 Gene3D Immunoglobulins 104 191 IPR013783 -
Eupl06g00218 297 MobiDBLite consensus disorder prediction 45 68 - -
Eupl06g00218 297 SUPERFAMILY AMPKBI-like 191 293 IPR037256 -
Eupl06g00218 297 SMART AMPKBI_2 204 294 IPR006828 GO:0005515
Eupl06g00218 297 MobiDBLite consensus disorder prediction 203 217 - -
Eupl06g00218 297 MobiDBLite consensus disorder prediction 1 25 - -
Eupl06g00218 297 MobiDBLite consensus disorder prediction 199 220 - -
Eupl06g00218 297 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 222 292 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00218 Eupl-Chr6 3435554 3441859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00218 119 189 Protein tyrosine phosphatase (PTP) family AT3G01510 36.986 1.98e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00218 K07199 - vvi:100248503 451.055