Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00214 ATGGCGGATTCCGACAATGATTCCGGTGGGCATAACAACAACGCAAACAGTGAGTTCTCGCCGCGAGAGCAGGACAGGTTCCTCCCCATCGCTAACGTCAGCCGGATCATGAAGAAAGCCCTTCCCGCCAACGCGAAGATCTCGAAGGACGCTAAAGAGACCGTACAGGAGTGCGTATCGGAGTTCATCAGCTTTATCACCGGAGAAGCGTCAGATAAGTGTCAGAGAGAGAAGCGAAAGACAATCAACGGTGACGATCTTCTCTGGGCCATGACTACTTTAGGGTTCGAAGAGTACGTGGAGCCATTGAAGATATATCTCCAGAAGTTTCGAGAGATGGAAGGAGAGAAAACCACGATGGGACGACAAGGCGAGAAGGAAGGCCCAGGTGGCGGCGCGGGTGGTGGAGGAGGAGCCGCTGGTGGTGGAAATGGTGGTGTTGTAAATTCTGGGAACAGTGGAGGTGGTTTCAATGGAAGTGGAATATATGGTGGTATGCAGTCGAGCATGATGATGATGGGGCATCATCAAGGGCAGATGTATGGCTCTGGTTCGTATCATCAGATGGCTGTGGGTGGTGGTGGGCCTGGGAAAGGCAGTTCGGGCAGCTCGGGCAGTGGTGGTGGCGGTGGAGCTTCTACTGGGAGGCCAAGGTAG 657 0.5403 MADSDNDSGGHNNNANSEFSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKFREMEGEKTTMGRQGEKEGPGGGAGGGGGAAGGGNGGVVNSGNSGGGFNGSGIYGGMQSSMMMMGHHQGQMYGSGSYHQMAVGGGGPGKGSSGSSGSGGGGGASTGRPR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00214 218 MobiDBLite consensus disorder prediction 1 21 - -
Eupl06g00214 218 MobiDBLite consensus disorder prediction 185 218 - -
Eupl06g00214 218 SUPERFAMILY Histone-fold 24 125 IPR009072 GO:0046982
Eupl06g00214 218 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Eupl06g00214 218 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Eupl06g00214 218 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982
Eupl06g00214 218 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Eupl06g00214 218 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Eupl06g00214 218 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Eupl06g00214 218 MobiDBLite consensus disorder prediction 116 139 - -
Eupl06g00214 218 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Eupl06g00214 218 MobiDBLite consensus disorder prediction 1 24 - -
Eupl06g00214 218 FunFam Nuclear transcription factor Y subunit B-3 16 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00214 Eupl-Chr6 3378335 3380330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00214 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 88.281 6.16e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Eupl06g00214 CBFD_NFYB_HMF 2.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00214 K08065 - nnu:104606630 270.396