Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00212 ATGGATGAAGGTGACGGAGGAGATCGAAACGACCAGTTCCACCGAAATGAAGCGATCTCCGCCGTCGCCGATGAGGGTTTCTTGGGGGAAGAAGACGACGACTATGAAGATCTCTATAACGACGTTAACGTTGGAGAGGGTTTTCTTCAGTCTTTGCGAAGAAATAATGAAGATTTAGGGTTTAGGAATGAGGAAGAGAAGAAGATTGAGTCGGCGGCCGAGTCGACGGGGATTTCGATCCCTGGGGTGGGTGGTGGTGGCAGTATCGGAGAAGGGAAGGTTGAGAAGGATGTGGGTGTTGCTGAGGGTGTTCCTAGGGTTCATGCTAGATTAGAAGGTTATCCAGACTTAGGGTTTAGAGGGAATGAGTTGGTACCAAAAGGTTCAGGCCTGGGTCCAGGTGGTGGTGGTGGTGGTGGAATTAGGGTTGAATTGGATCAATCATCAGGTAAAATGGGTGAAACAGTAGGGAAAATTGTTAATAGTAGTGTGCCATCTCAGGGGGTAGTGCAGCAATCCAATGGAATAGGTGTTGTGAATGTAGGAAATAATGGGGGTTTTGCAAGACAAGTAGGAGGAAATGTGAATGTTAATGGTGGGAGTGGGAATGGCGGTGTAGGTGGTGGTGGTGGAGGGAATGGGGGTGGTGGGACAATTCTCTTTGTGGGTGATTTGCATTGGTGGACTACGGATGCTGAGCTTGAGGCGGAGCTCTGTAATTATGGGATTGTGAAGGAAGTGAAATTCTTTGATGAGAAGGCGAGTGGGAAATCAAAAGGTTATTGCCAGGTTGAGTTTTATGATCCTGCTGCAGCGACGGCTTGCAAGGAAGGGATGAATGGGCATGCCTTTAATGGGCGACCATGCGTTGTGGCTTATGCTTCGCCTTATAGTGTTAGGAGAATGGGAGAGGCCCAAGTGAACAAGAACCAAGCGATTGGTCAGACAACTCTTGCTCAAGGGAGGAGGGGAATGGGTGATGCTGGAGGTAGAGGTACGGGCAGCAGCGTTGCCACGGGTGGGAGTTATCAAGGCGGTGATGGAAATAGAAATTATGGGAGGGGCACTTGGGGAAGAGGTAACACCCAGAACCAGGGCATGGGAAATAGAGGGCAAGTTGGGCCGATGAGGAATAGGATTGGTGGAATGGGTGGAAGGGGTATAATTGGAAATGGTGGTAATGGGTTTGGTCAAGGGCTTCCTGCAACCCCACCTCTGTTGCATCCTCAAACAATGATGGGTCAAGGTTTTGATCCGGCTTTTGGAGCGCATATGGGGAGAATGGGTGGTTATGGAGGTTTCCCTGCTGCTCCCACGCCTCCTTTTTCAGGAATATTGTCATCATTCCCCTCTGTCGGTGGTGTGGGTTTGCCTGGAGTGGCTCCTCATGTGAATCCAGCTTTCTTTGGGAGAGGAATGCCTGCAAATGCAATGGGGATCATGCCCACAACTGGTGTTGAGGGACATGGCATGGGGATGTGGTCAGACCCAAACGTGAGTGGATGGGGTAGTGAGGAGCCTGGTGGCAGAGCAGGAGAATCTAGTTACGGGGAGGATGCTGCATCGGACCATCAGTATGGAGAGGTAAGCCATGAAAGAGTGGGGTGGTCTAATGCAATGAAGGATAAAGATAGGGCTTCAGAACGGGATTGGTCTGGGGCTTCTGATAGAAGGTATCGAGATGACAGGGAACCAGGATCAGATAGAGATATGCCAAGGGAAAAAGATGTTATTCACGATCATGATTGGTTGGAAAGAAGGCATCGTGATGATAGAGAAACAGGTCGAGATCATGATAGGGAGAGGGACCGGGATCGAGAACGAGATCGAGGTCGAGACCGGGAGCGGGATCGGCAGAGAGAGGACAGAGATAGATACTTGGACCATCATAGATACAGGGAACGTGAATTGGAGCATGATGATGAGTGGGACAAAGGGCGATCATCAAGAACTAACAGCAAGTCACGGCTATCACATGAGGAGGCCCGACGTTCGAGGTCAAGGGATGCTGAGTATGGGAAGAGGCGTCGGCTACCCTCAGAGTAA 2046 0.5034 MDEGDGGDRNDQFHRNEAISAVADEGFLGEEDDDYEDLYNDVNVGEGFLQSLRRNNEDLGFRNEEEKKIESAAESTGISIPGVGGGGSIGEGKVEKDVGVAEGVPRVHARLEGYPDLGFRGNELVPKGSGLGPGGGGGGGIRVELDQSSGKMGETVGKIVNSSVPSQGVVQQSNGIGVVNVGNNGGFARQVGGNVNVNGGSGNGGVGGGGGGNGGGGTILFVGDLHWWTTDAELEAELCNYGIVKEVKFFDEKASGKSKGYCQVEFYDPAAATACKEGMNGHAFNGRPCVVAYASPYSVRRMGEAQVNKNQAIGQTTLAQGRRGMGDAGGRGTGSSVATGGSYQGGDGNRNYGRGTWGRGNTQNQGMGNRGQVGPMRNRIGGMGGRGIIGNGGNGFGQGLPATPPLLHPQTMMGQGFDPAFGAHMGRMGGYGGFPAAPTPPFSGILSSFPSVGGVGLPGVAPHVNPAFFGRGMPANAMGIMPTTGVEGHGMGMWSDPNVSGWGSEEPGGRAGESSYGEDAASDHQYGEVSHERVGWSNAMKDKDRASERDWSGASDRRYRDDREPGSDRDMPREKDVIHDHDWLERRHRDDRETGRDHDRERDRDRERDRGRDRERDRQREDRDRYLDHHRYRERELEHDDEWDKGRSSRTNSKSRLSHEEARRSRSRDAEYGKRRRLPSE* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00212 681 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 15 617 IPR034772 -
Eupl06g00212 681 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Eupl06g00212 681 SMART rrm1_1 219 292 IPR000504 GO:0003723
Eupl06g00212 681 MobiDBLite consensus disorder prediction 355 371 - -
Eupl06g00212 681 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 289 IPR000504 GO:0003723
Eupl06g00212 681 CDD RRM_CFIm68_CFIm59 220 293 - -
Eupl06g00212 681 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Eupl06g00212 681 MobiDBLite consensus disorder prediction 524 681 - -
Eupl06g00212 681 MobiDBLite consensus disorder prediction 1 30 - -
Eupl06g00212 681 MobiDBLite consensus disorder prediction 492 681 - -
Eupl06g00212 681 Gene3D - 212 306 IPR012677 -
Eupl06g00212 681 MobiDBLite consensus disorder prediction 320 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00212 Eupl-Chr6 3360848 3368513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00212 193 303 Eukaryotic Initiation Factors Gene Family AT4G34110 30.328 4.86e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00212 K14398 - nnu:104606631 800.431