Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00197 ATGCCCACATCGCACCACAAAATGGCATCATCTTCTCAGGAAATACTCCTCGCGAGCTCTCCTGATAGTCCCATCGCAGCCTATGATGCCTCCACCGGTGCCATCCTCGCTTACTTCACCGGCAGTCGATCCCCACGTAAAGGCCTCGCCCTTGCTGGAAATACCCTAATTGCCGCTTCTCACATCTCCTCAGACACCGCCTCTGGTTCTGTCCGCCTCTACAACTGGTGGTCGTCCATCGCTTTTCACCACCTTCCCGTTCCCGAACCTGTTGCCCCCTTAGCTGCCACTCCCGACGGCTTATACCTCTTTTCTGGTGGCCTATCAGGCCATATTTACGCCTTAACGCTTCCATCAGGTGATCTCCTTCGCTCGTTTCCTGCTCATTGTAAGCCCGTCTCTTGTCTCACCATCAACGACGATGCTTCTCTTCTCATCTCGGGCGGTGATGACGGAACCATATGTGTGTTCCCGATCCTACGCCTCCTAGATTCCTCATCCAATGATAATTCCAGTCAGTTTGCATTGTATAGTTTCCCCGGACACGCTTCATCCGTGACCGCTATCGCCACCGGAATGGGTGGTTGCAACTCGACTATCATCTCATGCTCATTGGACTGCACATGTAAGTTGTGGAGCTTAGCACACGGTTCCCACCTGCGCACAGTGCGGTTCCCGTGCATGATTTGGGGTGTTGCAATGGATTCCACCGAGTCAGATTTCTATGCCGGTGGATCAGACGGTCGTGTATACGTTGGGGTTTTGAAGGTCAATAGAAGACAGCCCATGAGTAGTGATGCTGAAGTGGTGGCCTGGGTCCCGGAGCACGGTGGAGCGGTGACAGCAGTGGCAATGGCGAACCAGGGACGGAATCTGGTGTCGGCTTCAGAAGATGGGAGTGTTCGAGTTTGGGAGGTGGAGTGTGGTAGGGTGGTTAGGGTTCTTGGGCATGAGAGGGGAAGCATCAGTGACGTTGTGGTGGCAAAAGGGATTAGAGAGGGTAGTTGTTTCGGTGTCAGATTTGGAGGTGGTGGTGGTGGTGGTGGTAGTGGGTTTGAATGGGGAGGTCAAAGTTTAGGGTTTTCGGGTAGAGAGATAAGTAGGCCAGTGAGGGAGGTGGGTGAGATGGAAGATACGTTGAGTGTGGTGGCGAAGGATAGGAGGAGAGCTATTGATACGCTTGAAGCTGCAATTGGGACGTATGGGAGGCTCTTGGAACTCATACTCAAGGAAGCCAAGGGAGGCGGTACTAATAACAACAATACTGATGAAGAGGAAGCCGAGGGGTAG 1290 0.5318 MPTSHHKMASSSQEILLASSPDSPIAAYDASTGAILAYFTGSRSPRKGLALAGNTLIAASHISSDTASGSVRLYNWWSSIAFHHLPVPEPVAPLAATPDGLYLFSGGLSGHIYALTLPSGDLLRSFPAHCKPVSCLTINDDASLLISGGDDGTICVFPILRLLDSSSNDNSSQFALYSFPGHASSVTAIATGMGGCNSTIISCSLDCTCKLWSLAHGSHLRTVRFPCMIWGVAMDSTESDFYAGGSDGRVYVGVLKVNRRQPMSSDAEVVAWVPEHGGAVTAVAMANQGRNLVSASEDGSVRVWEVECGRVVRVLGHERGSISDVVVAKGIREGSCFGVRFGGGGGGGGSGFEWGGQSLGFSGREISRPVREVGEMEDTLSVVAKDRRRAIDTLEAAIGTYGRLLELILKEAKGGGTNNNNTDEEEAEG* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00197 429 Gene3D - 260 331 IPR015943 GO:0005515
Eupl06g00197 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 314 IPR001680 GO:0005515
Eupl06g00197 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 179 222 IPR001680 GO:0005515
Eupl06g00197 429 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 11 322 IPR011047 -
Eupl06g00197 429 Gene3D - 3 255 IPR015943 GO:0005515
Eupl06g00197 429 SMART WD40_4 172 213 IPR001680 GO:0005515
Eupl06g00197 429 SMART WD40_4 119 158 IPR001680 GO:0005515
Eupl06g00197 429 SMART WD40_4 266 305 IPR001680 GO:0005515
Eupl06g00197 429 ProSiteProfiles Trp-Asp (WD) repeats profile. 126 157 IPR001680 GO:0005515
Eupl06g00197 429 PANTHER WD-REPEAT PROTEIN 18 13 329 IPR045227 -
Eupl06g00197 429 ProSitePatterns Trp-Asp (WD) repeats signature. 292 306 IPR019775 -
Eupl06g00197 429 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 307 - -
Eupl06g00197 429 Pfam WD domain, G-beta repeat 276 304 IPR001680 GO:0005515
Eupl06g00197 429 Pfam WD domain, G-beta repeat 120 156 IPR001680 GO:0005515
Eupl06g00197 429 Pfam WD domain, G-beta repeat 176 213 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00197 Eupl-Chr6 3114759 3116395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00197 105 310 U-box Gene Family AT2G33340 25.701 8.66e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00197 K14829 - nnu:104587917 529.25