Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl06g00181 ATGGTTTTGCCAAATGATGTTGATCTTTTGAACCCACCCGCGGAGTTAGAGAAGCGGAAGCACAAATTGAAGCGCTTGGTTCAAACCCCAAACTCTTTCTTCATGGATGTCAAATGCCAAGGTTGTTTTAATATAACTACCGTCTTCAGCCATTCCCAGACTGTTGTAGTATGTGGGAACTGCCAGAGCGTCCTTTGCCAATCTACTGGTGGCAAGGCACGACTTACAGAGGGCTGCTCTTTCCGTCGAAAGAATGACTAA 261 0.4598 MVLPNDVDLLNPPAELEKRKHKLKRLVQTPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQSTGGKARLTEGCSFRRKND* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl06g00181 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Eupl06g00181 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Eupl06g00181 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Eupl06g00181 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Eupl06g00181 86 Gene3D - 3 86 IPR023407 -
Eupl06g00181 86 FunFam 40S ribosomal protein S27 1 86 - -
Eupl06g00181 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl06g00181 Eupl-Chr6 2826053 2831566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl06g00181 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 90.698 1.55e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl06g00181 K02978 - han:110871818 169.859